Oceanirhabdus sp. W0125-5: OW730_15020
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Entry
OW730_15020 CDS
T08747
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
ocw
Oceanirhabdus sp. W0125-5
Pathway
ocw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ocw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OW730_15020 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocw03400
]
OW730_15020 (uvrA)
DNA repair and recombination proteins [BR:
ocw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OW730_15020 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OW730_15020 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
DnaJ_CXXCXGXG
nSTAND1
AAA_29
AAA_16
RsgA_GTPase
Viral_helicase1
Anti-TRAP
AAA_22
cobW
Toast-rack_PspC-Cterm
IIGP
Zn_ribbon_NOB1
MMR_HSR1
BCA_ABC_TP_C
DUF463
Motif
Other DBs
NCBI-ProteinID:
WBW95000
LinkDB
All DBs
Position
3259546..3262404
Genome browser
AA seq
952 aa
AA seq
DB search
MIKNLEIKGARVNNLKDISVNIPKNALTVVTGVSGSGKSSLVFDVIFSEGQRRFLSSLNT
YARRFAPLLKKPDVDFVFGLSPVLAISQKKGINNPRSTVGTMTDISDYLRVLFSSLGTIN
CPYCSHEFESKTTNQIVEHILTLPEGTTVEIYAPVNKVYGEDYDYLFDEIRSKGYRKFRV
DGVLLDSGKKHGLDDNKEYRIEVLIDKFVIKDSIHKQLTETINNGLFIGECFLCIDIYGE
KIDENALTEFYNRFGCKDHHIVVGELLPYYFTPNESDSACSTCRGTGIYRKAEPRLVVDK
WNKTIRQGALTNTFLSIKHPGKYMMLYSLAQHYNFSLDIPFKELPLEAQNVLFYGTNGEK
IKQIRPDDVSKKHPDEGKFLRYSGIINQLDKAYRISSRKGDAEYNYDFIYKKHMSEQVCP
ECNGTKLKRQRMLVNINGKNIYELGEMPIDELVDFLESTSIPLNKKQIGDQILKEITSRL
KLLLDVGLNYINLNRRGDSVSGGELQRIRLSTQLSSGLSGMLYVLDEPSIGLHSRDSNKI
IKTLKQLVDAGNTVLVVEHDMDTIAAADHIIEVGPGPGNYGGQIMAEGNINEISKDKKSL
TGQYLSGSKNIPLPQTRRESNGNYISIRGARENNLKNVNVDIPLGVFICVTGVSGSGKSS
LINSVLHKGLHSKLYDIRTTPGKHDSIEGYECINNVINIDQSPIGRNSRSNPATYIGFFN
KIRDLFADTDDAKKWGYEKSHFSSNNKDGRCDECAGNGLLITELQFMPDVETVCPACKGT
GFSKDILKVKYRGKNISEVLNMSVEEALQFFSDHKYIEHKLKVMAELGLGYIKLGQSSST
LSGGEAQRIKLASELGKIKRGAHNLYILDEPTTGLHLSDIKYLLNSLSKLVNAGHTVLVI
EHHMDVIKSSDHIIDIGPEAGKLGGYVVAEGTPEEIMNVSESYTAQFLRKVL
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgattaaaaacttagaaattaaaggtgcacgagtgaataatctaaaggatataagtgtt
aatatacctaaaaatgctcttactgtggttactggtgttagtggctcgggaaaatcctcc
cttgtatttgatgtaatatttagtgaagggcaaagaagattcttatcatctttgaataca
tacgcaagaaggtttgctccactattaaaaaagcctgatgttgattttgtttttggatta
tctccagtattagctatatcacagaagaaagggataaacaatccaagatcaacggttggg
actatgacagatatttctgactatctaagagttcttttctcatctctaggaactattaat
tgtccatattgttcacatgaatttgaatcaaaaactacaaatcagattgttgaacacatt
ttaactttaccagagggaacaactgtagaaatatatgctccagttaataaagtatatggt
gaagattatgattatttatttgatgagataagatcaaaaggatataggaaatttagagtt
gatggtgtattacttgattctggaaagaaacatggattagatgataacaaggaatataga
attgaggtattaattgataaatttgttattaaggattcaatacataagcagcttactgaa
actataaataatggtttatttattggtgaatgcttcttatgtatagacatttatggagaa
aaaattgacgaaaatgctttaacagaattttataatagatttggctgtaaggatcaccat
atagttgttggagaacttttaccatactattttacacctaatgagtcagatagcgcatgt
agtacatgtcgtggaacaggcatatatcgcaaggctgaacctaggttagttgttgacaaa
tggaataagacaattagacaaggcgctttaacaaatacatttctaagcattaaacatcct
ggtaaatatatgatgctatatagtttggctcaacattataatttcagtcttgatatacct
tttaaagagttaccattagaagcacaaaatgtgttgttttatggaactaatggagaaaaa
ataaaacaaatcagaccagatgatgtttcaaagaagcatcctgatgaaggaaaattttta
cgctacagtggaattataaatcaattagataaagcatatagaatatctagcaggaaaggt
gatgctgagtataattatgattttatatataaaaagcatatgtcagagcaagtgtgtcca
gaatgtaatggtacaaaacttaaaagacagagaatgctggtaaatattaatggtaaaaat
atatacgaactaggggaaatgcctatagatgagctggtagattttctagaaagtacatct
atacctcttaataaaaagcagataggggatcaaatattaaaagaaataactagccgcctt
aaattgcttttagatgtaggtttaaattatataaatttaaacagaagaggtgatagtgta
tctggaggagaattacagaggattcgtctatctactcagcttagttcaggactttctgga
atgttgtatgtacttgatgaaccaagcatcggtctccattccagggacagtaataaaata
atcaagactttgaagcaactagtagatgcaggtaatactgtattagtagttgaacatgat
atggacactattgccgcagcagatcatataattgaagttggtcctggtcctggtaattat
ggtggacagataatggcagaaggaaatattaatgaaatttctaaagataaaaaatctctc
actggacaatatctgagtggtagtaagaatatccctttgcctcaaacaagaagagaatca
aatggtaactatattagcataaggggagctcgtgaaaataacctgaaaaatgttaatgtg
gatattcctttaggtgtatttatttgtgtcactggggtttcaggctcaggtaagagtagt
cttataaatagcgttctgcataaaggtctacattcaaaattatatgatataaggacaaca
cctgggaaacatgattcaatagaagggtatgaatgtattaataatgtaattaatatagat
caatcacctataggtagaaattctcgttcaaatccagctacttatattggtttctttaat
aaaatacgtgacttgtttgcagatactgatgatgcgaagaaatggggttatgagaaatca
cattttagttcaaataataaagatggacgttgtgatgaatgtgctggaaacggtctattg
ataacagaacttcaatttatgcctgatgtagaaactgtatgtcctgcatgtaagggtaca
ggctttagtaaggatattctaaaagttaagtatagaggtaaaaatatttctgaagtccta
aatatgtcagtagaagaagcacttcaatttttcagtgatcataaatatatagaacataaa
cttaaagtaatggctgagttaggattaggatatataaaactcggtcagtcttccagtacc
ctttctggaggcgaagctcagagaattaaacttgcttcagagcttggtaaaataaaaaga
ggggctcataacctttatattcttgatgagcctacaactggcttgcatctgtctgatata
aagtatcttttaaatagtctaagtaaactggtgaatgctggacatacggtattagttatt
gaacatcatatggatgttataaaatcatcagatcacataattgatataggtccagaagca
ggtaaattaggaggatatgtagtagctgaagggactcctgaagaaattatgaatgtttct
gaatcgtatacagctcagtttctaagaaaagtattgtag
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