Oceanirhabdus sp. W0125-5: OW730_15615
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Entry
OW730_15615 CDS
T08747
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
ocw
Oceanirhabdus sp. W0125-5
Pathway
ocw02024
Quorum sensing
ocw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OW730_15615 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
OW730_15615 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocw03019
]
OW730_15615 (hfq)
03036 Chromosome and associated proteins [BR:
ocw03036
]
OW730_15615 (hfq)
Messenger RNA biogenesis [BR:
ocw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
OW730_15615 (hfq)
Chromosome and associated proteins [BR:
ocw03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
OW730_15615 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
LSM
Flag1_repress
DUF5608
Phage_Hfq
Motif
Other DBs
NCBI-ProteinID:
WBW95112
LinkDB
All DBs
Position
3388778..3389014
Genome browser
AA seq
78 aa
AA seq
DB search
MNKLNNNLQDIFLNTARKNKIGVTIYLVNGYQLRGFVTGFDSFTVVLDSDGKQMLVYKHS
ITTITPDTPILYSENTSK
NT seq
237 nt
NT seq
+upstream
nt +downstream
nt
gtgaataagttaaataataacttacaagatatatttttgaatacagctcgtaaaaataaa
attggtgttacaatatacctagttaatggttatcaattaagaggatttgtaactggattt
gatagttttactgttgttcttgattctgatggaaagcaaatgcttgtatataagcattct
atcacaacaattacaccagacacacctattttatatagcgaaaatactagtaaataa
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