KEGG   Oceanirhabdus sp. W0125-5: OW730_15615
Entry
OW730_15615       CDS       T08747                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
ocw  Oceanirhabdus sp. W0125-5
Pathway
ocw02024  Quorum sensing
ocw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ocw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OW730_15615 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    OW730_15615 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ocw03019]
    OW730_15615 (hfq)
   03036 Chromosome and associated proteins [BR:ocw03036]
    OW730_15615 (hfq)
Messenger RNA biogenesis [BR:ocw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     OW730_15615 (hfq)
Chromosome and associated proteins [BR:ocw03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    OW730_15615 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM Flag1_repress DUF5608 Phage_Hfq
Other DBs
NCBI-ProteinID: WBW95112
LinkDB
Position
3388778..3389014
AA seq 78 aa
MNKLNNNLQDIFLNTARKNKIGVTIYLVNGYQLRGFVTGFDSFTVVLDSDGKQMLVYKHS
ITTITPDTPILYSENTSK
NT seq 237 nt   +upstreamnt  +downstreamnt
gtgaataagttaaataataacttacaagatatatttttgaatacagctcgtaaaaataaa
attggtgttacaatatacctagttaatggttatcaattaagaggatttgtaactggattt
gatagttttactgttgttcttgattctgatggaaagcaaatgcttgtatataagcattct
atcacaacaattacaccagacacacctattttatatagcgaaaatactagtaaataa

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