Oceanirhabdus sp. W0125-5: OW730_22955
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Entry
OW730_22955 CDS
T08747
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ocw
Oceanirhabdus sp. W0125-5
Pathway
ocw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OW730_22955 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocw03019
]
OW730_22955 (recQ)
03400 DNA repair and recombination proteins [BR:
ocw03400
]
OW730_22955 (recQ)
Enzymes [BR:
ocw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OW730_22955 (recQ)
Messenger RNA biogenesis [BR:
ocw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OW730_22955 (recQ)
DNA repair and recombination proteins [BR:
ocw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OW730_22955 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
WBW99802
LinkDB
All DBs
Position
complement(4949484..4951673)
Genome browser
AA seq
729 aa
AA seq
DB search
MIKEELRSNLKKYFGYDEFRKGQLDIIENILDGNDVLGIMPTGAGKSICFQLPALILEGV
TIVISPLISLMKDQVDGLNHMGIKTTFINSTLNDREVEERFQEIMYGNYKLVYIAPERLK
SHKFIEMMYTVKVSMVAIDEAHCVSQWGHDFRSSYRYIKDFISSFEERPTVCAFTATATD
MVKEDIITLLRLRKPYTLTTGFDRENLKFQVEKCDDKKEYILNYIRANKGNTGIVYASTR
ADCEYLYTFLSKNEIKVAMYHGGLSEESRSSAQNDFSFDNVDIMVATNAFGMGIDKSNVR
FVIHYNIPKNIEAYYQEAGRAGRDGENSECILIFDPKDINVQSFFIDNSNLPPHLKTMEY
EKLRNMIDYCNTTRCLRKYILEYFGEDVQYEECGNCSNCHGDYEVQDITIEAQKIFSCVY
RAKEMYGAGVIAEILKGSRNKKIINNRLNEISTYGLMKDQTIKKISMLINKLTADGYLDV
TKSRYPVLKLNNKSVDILKSKEKLLIKLPVVKDTIIENDGLFNELKELRKNIADNENVPP
YLIFSDASLRDMSIIYPQNESEFLMVKGVGEQKLRLYGKQFIEATLKYIVEKNVSDEEIN
NNRIMNNRIMSNKKNEDKVDNKKKTNKVSSSKSDKIKSFEITYEMYKEGKSIEEICCERE
LKQISVEGHLVTAFSEGYDLTIEEFIPEKYISLIKEKMNEIGSERLKPVKDELPEEVEYF
WLKLIKEVL
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgattaaagaagaattaaggagtaatcttaaaaagtattttggttatgatgaatttaga
aaagggcaattagatataattgaaaatatattagatggtaatgacgtattaggtattatg
ccaacaggtgcaggaaaatccatatgctttcagcttcctgctttaattttagagggagta
actatagtaatctccccattgatttcacttatgaaggatcaagtagatggtcttaatcat
atgggaatcaaaactacatttattaatagtacactgaatgatagagaagtggaagagaga
tttcaagagataatgtatgggaattacaaactcgtttacattgcaccggaaagattaaaa
tcacataagtttattgagatgatgtatacagtgaaagtatcaatggtggctatagatgag
gctcactgtgtgtcccagtgggggcatgattttagatccagttatagatatataaaagat
tttataagttcttttgaagaaagacctactgtatgtgcattcactgccactgcaacagat
atggttaaagaagatattataactcttttaagattaagaaaaccatatacattgacaacg
ggatttgatagagaaaacttgaaatttcaggttgaaaaatgtgatgataaaaaagaatat
attcttaactatataagggcaaacaaaggaaataccggaattgtttatgcatctacaaga
gcggattgtgaatacctttatacatttctttctaaaaatgaaattaaggttgctatgtat
catggaggattaagtgaggaaagtagaagcagcgcgcagaatgatttttcttttgataat
gtagatattatggtggctaccaatgcttttgggatgggtatagataaatcaaacgttaga
tttgtaatacattataacattcctaaaaatattgaagcatattaccaagaggcaggaaga
gcagggagagatggcgaaaatagcgaatgtattttaatttttgatccaaaggatataaat
gttcagagtttcttcattgataacagtaatcttccaccacatttaaagaccatggagtat
gaaaaattaagaaatatgattgattattgtaatacaacaaggtgtcttagaaaatatata
ttagagtattttggagaagatgttcagtatgaagagtgtggcaattgtagtaactgtcat
ggtgattatgaggttcaagatataacaatagaggctcagaaaatattctcatgtgtatat
agagctaaagagatgtatggagctggagtaatagctgagatacttaagggatcaagaaat
aagaaaatcataaataatagattaaatgaaataagtacttatggacttatgaaagatcaa
acaataaagaagatatcaatgcttataaataaattaacagctgatggatatttagatgtt
accaaaagtagatatcctgtgctaaagctaaataataagtctgtagatattctaaaatca
aaagaaaagttattaattaagcttcctgtagtaaaagatactattattgaaaatgatgga
ttatttaatgaacttaaggagttaagaaagaacatagctgataatgagaatgttccacca
tatttaatcttctcagatgcatcattaagagatatgtcaataatatatcctcaaaatgag
agtgagttccttatggtaaaaggagttggagaacagaaacttaggctttatggaaagcaa
tttattgaagcaacattaaaatatattgtagaaaaaaatgttagcgatgaagaaatcaac
aataatagaataatgaataatagaattatgagtaataaaaagaatgaagataaagtagat
aataagaagaaaacaaataaagtctctagtagtaaatcagataaaataaagagctttgag
attacttatgaaatgtataaagaaggcaaaagcatagaagaaatttgttgtgagagagaa
ttgaagcagatatcagttgaggggcaccttgttacagcttttagtgaaggctatgatctt
actattgaagaatttataccagaaaagtatatttctttaattaaagaaaagatgaatgaa
attggttctgaaagattgaaacctgtaaaagatgaacttcctgaagaggtagagtatttt
tggcttaaactaataaaagaagttttataa
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