Oceanirhabdus sp. W0125-5: OW730_26350
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Entry
OW730_26350 CDS
T08747
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ocw
Oceanirhabdus sp. W0125-5
Pathway
ocw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OW730_26350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocw03019
]
OW730_26350
03009 Ribosome biogenesis [BR:
ocw03009
]
OW730_26350
Enzymes [BR:
ocw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OW730_26350
Messenger RNA biogenesis [BR:
ocw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OW730_26350
Ribosome biogenesis [BR:
ocw03009
]
Prokaryotic type
rRNA helicases
OW730_26350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
AAA_30
Ntox1
Helicase_RecD
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
WBW97180
LinkDB
All DBs
Position
complement(5675086..5676537)
Genome browser
AA seq
483 aa
AA seq
DB search
MNKKRFTDFGLHNDILRALKDLEFKYATEVQEKVIPYILKDKDLIVRAQTGSGKTAAFGI
PLCENVDANSRDPQVLILTPTRELAVQVKTDIGNIGRYMKIRCAAVYGKHPMRIEVGELK
QRVHMISGTPGRVNAHIENGTIDVDKIKYLIIDEADEMLNMGFIDQVVNIINKLPKDRVT
LLFSATMPEKIQEICKSYMSDPMRIEIQAEESTLEKINQVYYEIEENNKNGLLNRLIITQ
RPESCIIFCNTRETVRKVQRFLNKNKYFAEGLHGGMEQEIRLQTIKDFKKGKFHFLVATD
VAARGIHIDDISLVINYDIPVENESYVHRIGRTGRAGKGGKAVTFVAERDQRMLERIEEY
IELSIEKAEIPTELEVRESKETFPNMYRRKPKEKKDRAEKLNKKISRIRLNAGKNKKLRA
GDIIGALCSINGITNDDIGIIDIQKTCTYIEIFEGKGDVVLKALEKITIKGKSISFKNVG
HKY
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaagagatttacagacttcggacttcataatgatattttaagagcattaaaa
gatttagagtttaaatatgctacagaagttcaagaaaaagtaataccatacatattaaaa
gataaagatttgatagtaagagcacaaactggaagtggtaaaacagcagcatttggaata
ccattatgtgaaaatgtagatgctaattcaagggatcctcaggtgctaattttaacacct
acaagagaacttgctgttcaagtgaaaacggacattgggaatataggaaggtacatgaaa
attagatgtgcagctgtatatggaaaacatccaatgagaatagaagttggagaattaaaa
caaagagttcatatgatttctggaactccaggtagggttaacgcacatatagaaaatggt
actatagatgttgataaaattaaatatcttattatagatgaagctgatgagatgcttaat
atgggattcatagatcaggtggtaaatataattaataagttacctaaagatcgcgttaca
ttattattttctgcaacaatgccagagaaaatccaagaaatatgcaagtcatatatgtca
gatccaatgagaattgaaatacaagctgaagagtcaacattagaaaagattaatcaggta
tattatgaaattgaagaaaataataagaatggtttattgaatagattaattattacgcaa
agacctgaaagttgtattatattttgtaatactagagaaactgttaggaaagtacaacgt
tttttaaataaaaataaatactttgcagaaggtcttcatggtggtatggaacaagagatt
agactacaaacaattaaggattttaaaaaaggtaagtttcattttcttgtagcaacagat
gttgctgcgcgtggtatccatatagatgatatttcattagtaattaattatgatattcct
gtagagaatgaaagttatgttcatcgtatagggagaactggcagagctggaaaaggtggt
aaggctgtaacttttgttgctgagagagatcagcgtatgcttgaaagaatagaagagtat
atagagttgtctattgaaaaagctgaaattccaacagagttagaggtaagagagagtaaa
gaaacatttcctaatatgtatagaagaaagccaaaagaaaagaaagatagagctgaaaag
ttaaataagaagataagcagaattaggttaaatgcaggtaaaaataaaaagcttagagca
ggtgatattataggggcattatgttctatcaatggaatcactaacgatgatattggaatt
atagatattcaaaagacttgtacttatattgagatatttgaaggtaaaggtgatgtagta
cttaaagcattagagaagataactataaaagggaaatctatttcttttaaaaatgttggg
cataaatattag
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