Tepiditoga spiralis: OSSY52_04110
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Entry
OSSY52_04110 CDS
T06810
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ocy
Tepiditoga spiralis
Pathway
ocy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OSSY52_04110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocy03019
]
OSSY52_04110
03009 Ribosome biogenesis [BR:
ocy03009
]
OSSY52_04110
Enzymes [BR:
ocy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OSSY52_04110
Messenger RNA biogenesis [BR:
ocy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OSSY52_04110
Ribosome biogenesis [BR:
ocy03009
]
Prokaryotic type
rRNA helicases
OSSY52_04110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BBE30270
UniProt:
A0A7G1G1W5
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All DBs
Position
459848..461425
Genome browser
AA seq
525 aa
AA seq
DB search
MSKFEDLGLSETTLKALKKKGFEEPTPIQEKTIPVLLKGEVDLIGQAQTGTGKTAAFGLP
LIEKLTPGAKHVQALILAPTRELAVQVAEEINSLKGRSKLSILPIYGGASIERQLNALRR
GVDIVVGTPGRVIDHIKRKSLKLENISYFILDEADEMLNMGFIDDMEEIFKHTNPDKRVL
LFSATMPKPILGLAKKYMKNFEIIKVKKEQLTTNLTDQIYFEVNESDKFEALCRIIDIEK
DFYGLVFCRTKLDVDRVALKLTERGYNAEGIHGDISQYQRERILKKFKDKRAHILVATDV
AARGLDINDLTHVINYSLPQDPESYVHRIGRTGRAGKEGTAITFVTPSEYRKLIFIKRVA
NTNIRKEKVPGIKEIIKTKKERIKNEILDIVKNSNASEYENLAKELLNISDPVQAISALL
KHAYQSELDTANYNEISEVSINTKGKTRLFVALGKKDEMDIKKLLKFIKDKTDVDTKKIR
DVRIFENFSFISVPFEEAEIIIDTFKRKKRGRRPLVEKAKERKSK
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaatttgaagatctcggtttatccgaaacaacgttaaaagcattaaagaaaaaa
ggatttgaagaaccaactccaatacaagaaaaaacaattcctgttttattaaaaggcgaa
gttgatttaatcggtcaagctcaaacaggtactggtaaaacagcagcttttggtttacct
ttaattgaaaaattaacacctggtgcaaaacatgtgcaagctttaatacttgctccaaca
agagaacttgctgttcaagtagcagaagaaataaactctttaaaaggaagaagtaagtta
agtatacttccaatttatggtggagcatcaattgaaaggcaattaaacgctttaagaaga
ggcgttgatattgttgtaggaacacctggtagagtaatagatcatataaaaagaaagagt
ttaaaacttgaaaacatatcttatttcattttagatgaagctgatgaaatgttaaatatg
ggattcatagacgatatggaagaaatttttaaacatacaaatccagataaaagagtttta
ttattttctgcaacaatgcctaaacctatattaggtcttgcaaaaaaatatatgaaaaat
tttgaaattataaaagtaaaaaaagagcaattaacaaccaatcttacagatcaaatatac
tttgaagttaatgaaagtgataaatttgaagctctttgtagaataattgatatagaaaaa
gatttttatggtttagttttctgtagaacaaaattagatgttgatagagttgctttaaaa
ttgactgaacgtggatataatgctgaaggtatacatggagatatttcacagtatcaaagg
gaaagaattttaaaaaaattcaaagataaaagagctcatatcttagttgcaacagatgtt
gcagcaagaggtttagatataaatgatttaacccatgtaattaactattcccttccacaa
gatccagaatcttatgttcatagaattggaagaacaggaagagctggtaaagaaggaacc
gctataacttttgtaacaccttctgaatatagaaaattaatatttataaaaagagttgca
aatactaatataagaaaagaaaaggtacctggtataaaagaaattattaaaactaaaaaa
gaaagaataaagaatgaaattttagatatagttaaaaattcaaatgcttctgaatatgaa
aatttagcaaaagaattattaaatatttcagatccagtacaagcaatttctgctctttta
aaacatgcttatcaaagtgaattggatactgcaaattataatgaaataagtgaagtttct
ataaatactaaaggaaaaacaagattatttgttgctcttggtaaaaaagatgaaatggat
atcaaaaaattattaaagtttatcaaagataaaactgatgttgatactaaaaaaattaga
gatgttagaatttttgaaaacttctcatttatatctgttcctttcgaagaagctgaaatt
ataatcgatacatttaaaagaaaaaagagaggaagaagacctcttgtagaaaaagcaaaa
gaaagaaaatctaaataa
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