Tepiditoga spiralis: OSSY52_12630
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Entry
OSSY52_12630 CDS
T06810
Symbol
polC
Name
(GenBank) DNA polymerase III PolC-type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
ocy
Tepiditoga spiralis
Pathway
ocy03030
DNA replication
ocy03430
Mismatch repair
ocy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ocy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OSSY52_12630 (polC)
03430 Mismatch repair
OSSY52_12630 (polC)
03440 Homologous recombination
OSSY52_12630 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocy03032
]
OSSY52_12630 (polC)
03400 DNA repair and recombination proteins [BR:
ocy03400
]
OSSY52_12630 (polC)
Enzymes [BR:
ocy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OSSY52_12630 (polC)
DNA replication proteins [BR:
ocy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OSSY52_12630 (polC)
DNA repair and recombination proteins [BR:
ocy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OSSY52_12630 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
DEDDh_C
RNase_H_2
HHH_3
Rep_fac-A_C
SSB
Zn_ribbon_8
YhfH
Motif
Other DBs
NCBI-ProteinID:
BBE31122
UniProt:
A0A7G1GAG2
LinkDB
All DBs
Position
complement(1381106..1385308)
Genome browser
AA seq
1400 aa
AA seq
DB search
MELKEFFLEYLGFIPLKINGNIDINKKECIVELHESKNSSFENYLKKLLMRITKKNVSIK
QLGNNSLQFFVNNWNNLITGNQLERFLRLILPEIENEDTLILKTHSLLIKSKINMNKSIF
EDFILKYTGKKLNYKIVIDEKLNPETETYSQNYYDNQMEYIEQQNYETPLKQTNTKLNNG
NVIIGKNFKKIPIPLKNIPLSENTIIVVKGTVFHKEYNDKNKIVSIFITDKTDSIIIKAF
KEKAEKIFNSISEGDSIKVEGSIFYDTYINDFAIMPFNLIKEKSNDERMDTYEEKRVELH
MHSRLSTMDGILPIKDIVNQAAKWGHKAVAITDHGIVQSIPVFYDTAKKANIKPIFGTEA
YVVDESVNIITLNSEDKLLDETDYVVFDFETTGLQPAVNEIIEIGAVKIKNGEVSETYHE
LIKPTVKLPEIITKITNITDEMLEDKKGIEEVLPSFLEFIEGTVLVAHNADFDYRFLREW
VNKLYNKKFKMTYIDTLSMSKSLLNLSGYALNRVVKALKLDNFNHHRADEDARITALVFL
ELLKKAKNRGLEKLSELDNLKKLIDYKSLRPVHMTILVKNKIGLKNLYKLISNAHLKYFY
RVPRILKSELNNLREGLLIGSGCQDGELSEAFLRSATKDELVEIAKFYDFIEIMPIDTVE
TKDPLTDDLKKDMYRTFYNISKELNLPSVMTGNVHYMESKDVKFRYALKVADKKRPMISN
RYFRTTNEMIDEAIKIFEDKTIAEEIVIKNTNKIANLIEEIQPLKKVLTPPKIDGAEDMV
RNLSMDTAHKIYGEPLPQIIVDRLNFELDAIINNGYSVLYLMAQKIVKKSNDDGYLVGSR
GSVGSSLVATMMGITEVNPLAPHYICPECKYSEFITDGSYSSGYDLPDKKCPKCGSKLKK
NGQSIPFATFMGFEGDKVPDIDLNFSGEYQTTAHKYVEEMFGVGHVFKAGTISTVAERTA
YGYAKAFKEDMDKYNLDKFYGDVRSAELQRIASHITGVKRTTGQHPGGLMIVPKEYEVYD
FTPIQRPANDQKSTVTTTHFDYHVIHDDLIKLDALGHDDPTFIRMLQDLTGIDPLDVPLD
DKETISLFSGYSALKADLKKELDSNVGSFGIPEFGTPFVRRMLEDTMPKTFAELVRISGL
SHGTDVWLGNAQTLIKEGKATLKDVISCRDDIMNYLIQKGNDPKKSFFIMEKVRKGKGLT
PEEEKQMRDVKVPEWFINSCKKIKYLFPKAHATAYVSMAVRIAWFKVHEPLAFYATYFSV
KGDEFNLAVIIKGKNAIKKRLMELKTMDLDVKKKSEKTVLEIALEMLLRGFEFKNVDLNN
SDSKKFLIVDNGLLIPFLKIPQLGEKAAESIIVERQKKPFNSIQNLLSRTGLNKTNIETL
KELGILKGLPETNQMSLFGG
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atggaattaaaagagttttttttagaatatttggggttcattccattaaaaataaatgga
aatatagatataaataaaaaagaatgtatagtagaacttcacgagagtaaaaattcttca
tttgaaaattatttaaaaaaacttttaatgagaataactaaaaaaaatgttagtataaaa
caattgggaaataattccttacaatttttcgtgaataattggaataatctaataacagga
aatcaattagaaagatttttaagattaatattacctgagatagaaaacgaagacacttta
atcttaaaaactcattcattattaataaaatcaaagataaatatgaataaatctattttc
gaagatttcattttaaagtatacaggaaaaaaattaaattataaaattgttatcgacgaa
aaattaaatccagaaacagaaacatattctcaaaattattatgacaatcaaatggaatat
attgaacaacaaaattatgaaactcctttaaaacaaacaaatacaaaattaaataatggt
aatgtaataatcggaaaaaactttaaaaaaattcctattccattaaaaaatatcccactt
tcagaaaacaccataattgttgtaaaaggtactgtttttcataaagaatacaatgataag
aataaaatagtttctatatttataacagataaaaccgattctattataataaaagctttt
aaagaaaaagcagaaaaaatcttcaactcaattagtgaaggagattcaataaaggttgaa
ggaagtattttttatgatacttatataaatgactttgctataatgccatttaatttaata
aaagaaaaaagcaatgatgaaagaatggatacttatgaagaaaaaagagtagaacttcat
atgcattcaagattgagtacaatggatggaattttaccaataaaagatatagtaaatcaa
gcagcaaaatggggacacaaagcagttgctataaccgatcacggtattgttcaaagtata
cctgttttttatgatacagctaaaaaagctaatataaaaccaatttttggtacagaagct
tatgttgttgatgaatctgtaaatattataactttaaattcagaagacaaattattagac
gaaaccgattatgttgtttttgattttgaaacaactggacttcaaccagcagtcaatgaa
ataattgaaataggtgctgtaaaaataaaaaatggtgaagtatctgaaacttatcatgaa
ctaattaaaccaactgtaaaattacctgaaattataacaaaaataacaaatataacagat
gaaatgcttgaagataaaaaaggcattgaagaagtattaccttcttttttagaatttata
gaaggaactgtattggttgcacacaacgctgactttgattatagattcctaagagaatgg
gtaaataaactttataataaaaagtttaaaatgacttacatagatactctttctatgtca
aaatcccttttaaatctttctggatatgctttaaatagagttgttaaagctttaaaatta
gataatttcaatcatcatagagctgatgaagatgcaagaataacggctttggtattttta
gaattgttaaaaaaagctaaaaatagaggtttagaaaaattatctgaattagataattta
aaaaaattaatagattataagagtttgagaccagtacatatgactatcttagttaaaaat
aaaattggtttaaaaaatctttataaattaatttcaaatgcacatttaaagtatttttat
agagttccaagaattttaaaaagcgaattgaacaatctaagagaaggtttattaatagga
agcggatgtcaagatggtgaattatcagaagcatttttaagaagtgctaccaaagatgaa
cttgtagaaattgcaaaattttatgactttatagaaataatgccaatagatactgtagaa
acaaaagatccattaactgatgatttaaaaaaagatatgtatagaacattttataatata
tcaaaagaattaaaccttccatcagtaatgactggaaatgttcattatatggaatcaaaa
gatgttaaattcagatatgctttaaaagttgcagataaaaaaagacctatgatatcaaat
agatattttagaacaacaaatgaaatgatagatgaagcaattaaaatatttgaagataaa
actattgccgaagaaatagtaataaaaaatacaaacaaaattgctaatttaattgaagaa
attcaaccattgaaaaaagtattaacccctccaaaaattgatggagccgaagatatggtt
agaaatctttcaatggatacagcacacaaaatttatggtgagcctttaccacaaataata
gtagatagacttaactttgaattagatgcaataataaataatggttattcagttttatac
ttaatggctcaaaaaatagttaaaaaatccaatgatgatggttatcttgttggatcaaga
ggttctgttgggtcatcattagttgcaacaatgatgggaataactgaagtaaatcccctt
gcacctcattatatctgtccagaatgtaaatattcagagtttattacagatggctcttat
agttcaggatatgatttaccagacaaaaaatgccctaaatgtggttcgaaattaaagaaa
aacggtcaatcgattccttttgctacctttatgggatttgaaggagataaagtacctgat
atagatttaaacttctctggagaatatcaaacaacagctcataaatatgttgaagaaatg
tttggtgttggtcatgtttttaaagctggaactatttccaccgttgcagaaagaactgcg
tatggttatgctaaagcttttaaagaagatatggataaatataatttagataaattttat
ggagatgtaagaagtgctgaacttcaaagaattgcatctcacataaccggtgtaaaaaga
acaacaggtcagcatcctggtggactcatgattgttccaaaagaatatgaagtttatgat
ttcacaccaatacaaagaccagccaatgatcaaaaatcaacagttacaacaactcatttt
gattatcatgtaatacatgatgatttaataaaattagatgcacttggacacgacgaccct
acatttataagaatgcttcaagatcttacagggatagatccattagatgttcctttagat
gataaagaaacaataagtttgttttcaggttatagtgcattaaaagctgatctaaaaaaa
gaactagattcaaatgttggttcattcggaatcccagaatttggaactccatttgttaga
agaatgttggaagatactatgccaaaaacatttgcagaacttgttagaatttcaggttta
tctcacggaactgatgtttggcttggtaacgctcaaactcttataaaagaaggaaaagca
accctaaaagatgttatttcttgtagagatgatattatgaattacttaattcaaaaagga
aatgatccaaaaaaatctttttttataatggaaaaagtaagaaaaggaaaaggtttaact
ccagaagaagaaaaacaaatgagagatgttaaagtgccagaatggtttataaattcctgt
aaaaaaataaaatacctttttccaaaagctcatgctacagcttatgtttctatggctgtt
agaattgcttggtttaaagtacatgaaccacttgcattttatgcaacttatttttcagta
aaaggcgatgaatttaatttagccgttataataaaaggtaaaaatgcaataaaaaaaaga
ttgatggagttaaaaactatggatcttgatgttaaaaagaaaagtgaaaaaacagttctt
gaaattgcactcgaaatgcttttaagaggttttgaatttaaaaatgttgatttaaataat
tccgattcaaaaaaatttttaattgttgataatggattattaatcccatttttaaaaata
cctcaacttggtgaaaaagctgcagaaagcattatagtagaaagacaaaaaaaacctttt
aactcaatacaaaacttattatctcgaaccggtttaaataaaaccaatatagaaactcta
aaagagcttggaatattaaagggacttcctgaaactaatcaaatgtctctttttggagga
taa
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