Tepiditoga spiralis: OSSY52_14550
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Entry
OSSY52_14550 CDS
T06810
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ocy
Tepiditoga spiralis
Pathway
ocy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ocy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OSSY52_14550 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocy03400
]
OSSY52_14550 (mfd)
Enzymes [BR:
ocy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OSSY52_14550 (mfd)
DNA repair and recombination proteins [BR:
ocy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OSSY52_14550 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
SNF2-rel_dom
AAA_30
Nudc_N
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BBE31314
UniProt:
A0A7G1G7X6
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All DBs
Position
1588333..1591221
Genome browser
AA seq
962 aa
AA seq
DB search
MFNIKNLINKIDKNKNNVIIIPEYSKFEVEDEVLYYPDSDIFPFEEFDISSEIKSKRLKT
LYELKNKKNNIIITTLHAITRYTIPLKHYYIKRIENNFEDILYELGYTYKNEVREFGEYS
KRGFIRDIFLPISNNPIRIELFDNDIERINLFDSFTQKSIKNVSYFDLIPGSEVYRFKEN
IELVENRINRIQKNLKTDDEVSIEALYSIPGIFHKDKNTLFSYLENNTDFYLINKKDILK
SFSEKEKENIEVCDTNLKKAIYKEFSGISIDFLKDLKYKEYKVNFKNNVILKKEKVKYDM
EEIPLIDWEDLKENDYVVHSDYGIGLYKGIKTKETILGIREYIIVEYSNSSRVFVPVERL
DKLSKFIGDTSKIKISNLSGKRWQSKKKKVEKNIREKLNELKEIYAKRENSKGISLIGDK
ELEEKFVNTFSHIETADQIRSINEVKKDLESLKPMDRLLVGDAGFGKTEIAMRAAFKAVV
SNYQTLLLAPTTILAKQHYQTFKERMDPFGVNIELITRYKTISEKENLYKKIKNGNVDII
IGTHSLFSKKIDVKNLGLVIIDEEQKFGVLQKEKFKKIQIGVNILMMSATPIPRTMYKSM
SGLQEISTISTPPFGRIPIQTYVGLYSKKIVRKALLREKSRSGQSIFIHNRVQDIENIYS
ELKSIVPELKVKYVHGRMKKSKFIDIINDFYSNKIDVLLATTIIENGIDVPNANTLIVDD
SFRYGISQLYQIKGRVGRTNKRAFAYFMYRNQLLNEDSKKRLESIKRFNEPGSGLKLALR
DLEIRGYGDLLGLEQKGHINTIGLHLYKNILEKIMLEEKVTDDEKINLEFTDIIGIKGNM
IIPENYINNSIERMRIYRRISICKSENEVISIKNEIEDRFGRLPKEIKTLFDYAIVRVKA
TKLKIEKIEIGNGYILFKYNKGAIPKIENFLKHSKSKFHSKTNEIICYGTDDEIKFLNKV
LR
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
ttgtttaatattaaaaatttaataaataaaatagataaaaataaaaataatgtgattatt
ataccagaatattcaaaatttgaagttgaagatgaagttttgtattatcctgattctgat
atttttccatttgaagaatttgatatttcttcagaaataaaatcaaagagattaaaaact
ttgtatgaattaaaaaataaaaaaaacaatataataataacaacattacatgctataaca
aggtatacaataccattaaagcattattatataaaaaggatagagaataattttgaagac
atattatatgaattaggatatacatataaaaacgaagttagagagtttggagaatattct
aaaagaggatttataagggatatttttttaccaatatcaaataatccaataagaattgaa
ttgtttgataatgatattgaaagaataaatctttttgatagttttacacaaaagtctatt
aagaatgttagttattttgatttaattccaggttcagaagtgtatagatttaaagaaaat
atagaacttgtagaaaatagaatcaatagaattcaaaaaaatttaaaaacggatgatgag
gtatcaattgaagccctttattctattccgggaatttttcataaagataaaaatacattg
ttttcatatttagaaaataacacagatttttatttaattaataaaaaagatattttaaaa
agtttttctgaaaaagaaaaagaaaatatagaagtatgcgatacaaatttgaaaaaagca
atatacaaagaattttctgggatatctatagattttttaaaagacttgaagtataaagaa
tacaaagtgaattttaaaaataatgtaattttaaaaaaagaaaaagtaaagtatgatatg
gaagaaattccattaatagattgggaagatttgaaagaaaatgattatgttgtgcactct
gattatggaataggattgtataaaggaataaaaactaaggaaacaattttagggataaga
gagtatataatagttgaatactctaatagttcaagagtgtttgtaccagtagaacgttta
gataaactttcaaaatttattggggatacaagtaaaataaagatttcaaatctttctgga
aaaagatggcaatctaaaaagaaaaaagtagaaaaaaatataagagaaaaattaaatgag
ttaaaagaaatatatgctaaaagagaaaatagcaaaggaatatctttaattggagataaa
gaacttgaagaaaaatttgtaaatactttttcacatattgaaactgcagatcaaataagg
agtataaatgaagtaaaaaaagatttagaaagtttaaaaccaatggatagattattagtt
ggagatgctggatttggtaaaactgaaattgctatgagagctgcatttaaagcagtagta
tcaaattatcaaactttattgttagctccaactactatactggctaaacagcattatcaa
acatttaaggaaagaatggatccatttggagttaatatagagttaattacaagatataaa
actatttctgaaaaagaaaatttgtataaaaaaataaaaaatggaaatgtagatataata
ataggaacacattcattattttcaaaaaaaatagatgtgaaaaatttaggtcttgtcata
atagatgaagaacaaaaatttggtgttttacaaaaagaaaaatttaaaaaaatacaaata
ggagttaatattctaatgatgagtgcaactccaattccaagaactatgtataaatcaatg
agcggacttcaagaaatttcaactatttcaactccaccgtttggaagaattccaatacaa
acttatgttggcttatactctaaaaaaatagttagaaaagcacttttaagagaaaaatca
agaagtgggcaaagtatatttatacacaatagagttcaagatattgaaaatatatacagt
gaattaaaaagtattgttcctgaattgaaagtaaaatatgtacatggaagaatgaaaaaa
tctaagtttatagatataataaatgatttttatagtaataaaatagatgtgctattagca
acaactataatagaaaatggaattgatgtaccaaatgccaatactttaatagttgatgat
tcttttagatatggtatttcacagctttatcaaataaaaggaagagtaggaagaactaat
aaaagagcatttgcttattttatgtatagaaatcaattattaaatgaagattcaaaaaaa
agattagaatcaataaagagattcaatgaaccaggaagtggattaaagcttgcgttaaga
gatttagaaataagaggatatggagatcttttaggattagaacagaaaggtcatataaat
actataggtttgcatttatataaaaatattttagaaaaaataatgttggaagaaaaagtt
acagatgatgaaaagattaatttagagtttacagatattataggtataaaaggaaatatg
ataatacctgaaaattatataaacaattcaattgaaagaatgagaatatatagaagaatt
tcaatttgtaaatcagaaaatgaagttatatcaataaaaaatgaaatagaagacagattt
ggaagattaccaaaagaaataaaaaccttatttgattacgcaatagttagagttaaagca
acaaaattaaaaatagaaaaaattgaaataggtaatggatatattttattcaaatataat
aaaggtgcgattcctaaaatagaaaattttttaaaacattcaaaatctaaatttcatagt
aaaacaaatgaaattatatgttacggaacagatgatgaaataaaatttcttaacaaagta
ttgaggtga
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