Ochotona curzoniae (black-lipped pika): 121145482
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Entry
121145482 CDS
T11174
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121145482 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocz03021
]
121145482 (PCF11)
03019 Messenger RNA biogenesis [BR:
ocz03019
]
121145482 (PCF11)
Transcription machinery [BR:
ocz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121145482 (PCF11)
Messenger RNA biogenesis [BR:
ocz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121145482 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
121145482
NCBI-ProteinID:
XP_040820290
LinkDB
All DBs
Position
Unknown
AA seq
1682 aa
AA seq
DB search
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGPAPSKLHVSQIAPMAVKVPHQVPVQPEKSRPGPSQVQDLKGTNRDPRLNR
MSQHSSHGKDQSHRKEFLMSTLNQSDIKTSKTVPSEKLNSSKQEKSKSSEKVTKKELDQI
DSKSKSKSKSPSPLKNKFSHTKDLKNQESESARLSDMNKRDPRLKKHLQDKTDGKDDDGK
DKRKTAEKKDKDEHMKSEHRMVGSRNKIINGIVQKQDVITEESEKQGTKPGRSSTRKRSR
SRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKTGKIRQSGVKQSHMEEFTPTSREE
RNTKRSTKQDIRDPRRMKKAEEERPQESANQHSTKSGTEPKENVENWQSSKSTKRWKSGW
EENKSLQQSDEHGKSPHLRHRDSWSSTKGILSPRAPKQQHRLSVDANLQIPKELTVASKR
ELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKPLL
SDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASRNS
GAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFNDRF
PLKRPRYEDADKPFVDSPGSRFAGLDTNQRLTALAEDRPLFDGPSRPSVARDGPTKMIFE
GPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGAP
LRFEGPIGQAGGGGFRFEGSPGMRFEGSAGGLRFEGPGGQPVGPLRFEGHRGQPVGGLRF
EGPHGQPVGGHRFDSPRGQPVGGLRFEGGHGPAGAGIRFDGPHGQPGGVIRFEGPLLQQG
VGMRFEGPHGQSVAGLRFEGQHSQLGGNLRFEGPHGQPGVGVRFEGPLVQQGGGMRFDGP
NVPGGGLRIEGPLGQGGPRFEGCHTLRYDGQPGQPSLLPRIDGLHGQPGPRFERTGQPGP
QRFDGPPGQQIQPRFDGVPQRFDGPQHQQASRFDMPLGLQGTRFDNHPSQRLESAVPFGQ
PGPFSDPPGGAFNAPSQGLQFQRHEQMFDSPQGPNFNGPHGPGNQNFSNPLNRAGHYFDE
KNLPNSQFGNFGNLPVTVGNIQASQQVLPGVAQPIPFGQGQQFLPVHPQNPGSFVQNPSG
ALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQTNEAAAQPSTEEEEDQNEDQ
DVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEK
DVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVP
AGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPS
PSKTPAENPLNIMLNIVKNELQEPCESPKVKEEQIDTPPACTEENLATPTEIKTENDTVE
SV
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtgctgccggggcccgggaggacgcctgtcgg
gattatcagtcatcgctcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccctggatgtcagagttaattca
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacatctagcatccac
gtgaatcctaaatttttaaataaatcgccggaagagccttccacacctggcacagtggtc
agttcgcccagcatctccactcctccaattgttcctgatatacaaaagaatcttacccag
gaacaactaataagacagcagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagctcgaactagaacaagctaaggcacaattggcagtttctcttagtgtt
cagcaggagacatccaatttaggtcctggacctgcaccatccaaattacacgtctcacaa
attgcccctatggcagtgaaagttcctcatcaagttcctgtgcaacctgagaaaagccgc
ccgggtccgtcccaagttcaggatttgaaaggcactaaccgggatccccgccttaacagg
atgagtcagcattcctctcatggaaaagatcaaagtcacaggaaagaatttctaatgagc
acgttgaaccagtctgatattaagacaagtaaaactgtaccctctgagaaactaaactca
tctaagcaagagaaaagtaaatcaagtgaaaaagtaactaagaaagaacttgaccaaata
gattctaaatccaaatctaaatctaaatcaccatcacctttgaaaaacaaattttcacac
acaaaagacttgaaaaatcaagaatcagaaagtgcaaggttgtctgatatgaataagagg
gatccgcggttaaaaaaacatcttcaggataagactgatggcaaagatgatgatggaaaa
gataaaagaaaaactgcagagaaaaaggataaagatgagcacatgaaatctgaacacaga
atggttggaagtagaaataaaatcataaatggtattgtacaaaaacaggacgtaataaca
gaagaatcagaaaaacaggggacaaaaccagggagatcgagtactagaaagcgatcaagg
tcacgatcacccaagtctcggtcaccaattatacattcaccgaagagaagagataggcgg
tcacccaaacgaaggcaaaggagtatgtctccaacttcaacacctaaaactggaaaaatt
cgccagtcaggagttaagcagtcacatatggaagagtttacgccaacttccagggaagaa
agaaacacaaaaagaagcactaagcaggatattcgtgatccaagacgaatgaaaaaggct
gaagaggaacgaccacaagaatctgcaaatcagcattctacaaagtcgggcactgaacca
aaagaaaatgtagaaaattggcaaagttctaagtctaccaaaagatggaaatctggttgg
gaagaaaataaaagcttgcaacagagtgatgaacatggtaaatctcctcatctaaggcat
agggacagctggtcgagcactaaaggaatcttgtcacctcgagccccaaagcagcagcat
cgactaagtgtagatgctaaccttcagattcctaaagagttaactgtggcaagcaaaaga
gagttgcttcaaaagacgagtgaacgtttagcatcaggtgaaattacccaagatgagttc
cttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacatagatgc
aatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacctctctta
tctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacaggttcag
cattcatttccaagacttgatctcttagatcctgatatttttgactaccctttgactgat
gccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagaaatagt
ggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttctcctata
tctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaagacatgac
gagcaagtctctgctaaaggtgtacgagaagagcagagatctccattcaatgatcgtttt
ccacttaaacgacctagatatgaagatgcagataaaccatttgtagatagcccaggatca
agatttgccggccttgatacaaatcagcgacttacagctttagctgaagacagaccgtta
tttgatggacctagcaggccatcggtagccagagatggtccaaccaagatgatttttgaa
ggacctaataaattaagccctagaattgatggacctccgacaccaggttctcttcgcttt
gatgggtcaccaggacaaatggggggaggaggccctttgagatttgaagggccacagggt
cagctaggaggtggctgtcctttgagattcgaaggtcctccagggccagtaggggctcct
ttgcggtttgaggggccaattggccaagcaggaggaggtggttttcggtttgagggatcc
ccaggtatgagatttgagggatctgcaggtggtttgcgatttgaaggaccaggaggccag
cctgtgggccccctcagatttgaggggcatcgtggtcaacctgtgggagggctaaggttt
gagggaccacatggtcagcctgtgggcggacatagatttgatagtcctcgaggtcagcct
gtaggtggactaagatttgaggggggtcatggtccagcaggggctgggatcaggtttgat
ggacctcatggtcaaccaggaggtgtaatcagatttgaaggccctttgttacagcaagga
gttggaatgaggtttgaaggcccccatggtcagtcagtggctggtctgaggtttgaggga
caacatagtcaacttggtgggaacctgaggtttgagggtccacatggtcaaccaggggtc
ggcgtgagatttgaaggacctttagttcaacaaggaggcggaatgaggtttgatggtcct
aatgtaccgggaggtggcctaagaattgaaggtcctcttggtcagggtggtccaagattt
gaaggttgtcatactttgagatatgatggacagccaggtcagccatcacttttgccacga
attgatggattacacggtcagccgggtcctaggtttgaaagaactggtcagccaggccca
cagaggtttgatggaccacctggacaacaaatacaaccaagatttgatggtgtacctcaa
agatttgatggtccacaacaccagcaagcctcaaggtttgatatgcctcttggtctccaa
ggcacaagatttgacaatcacccgtcacaaaggcttgaatcagcagtgccttttggtcag
cctgggccatttagtgacccaccgggtggtgctttcaatgctccgtcacaaggactgcag
ttccagagacatgaacaaatgtttgactcacctcaaggaccaaattttaatggaccgcat
ggccctggaaatcagaatttctcaaatccccttaacagagctggacactattttgatgaa
aagaatctccctaattctcagtttggaaactttggcaatttaccagtaactgtaggaaat
attcaggcctctcaacaggttctacctggtgttgctcagccaataccatttggccaagga
caacagtttttaccagtccatccacaaaatcctggatcatttgttcagaatccctcagga
gctcttcctaaggcatatcctgataatcatctcagtcaggtggatgtaaatgaattattt
tcaaaactgctaaaaacaggaattctcaaattgtcccaacctgactctgctacaacacaa
acaaatgaagcggctgctcaaccttccactgaagaggaggaagatcaaaatgaagatcag
gatgttccggatcttactaattttacaattgaagaattaaaacaacgttacgacagtgtt
ataaatcggctgtacactggtattcagtgttactcctgtggaatgaggtttacaacatca
caaacagatgtgtatgcagatcacttggactggcattaccggcaaaatagaactgagaaa
gatgttagcagaaaagtcactcataggcgttggtactacagtttaacagactggatagaa
tttgaggaaatagctgatctagaagaacgtgcaaagagccagttttttgaaaaggtccat
gaagaagttgtgcttaaaactcaggaggctgctaaagaaaaagagtttcaaagtgtacct
gctggaccggctggagccgttgagagttgtgaaatttgtcaagaacaatttgaacaatac
tgggatgaagaagaagaggaatggcatttaaaaaatgctatcagagtagatggaaagatt
tatcatccatcatgttatgaagattatcaaaatacatcttcatttgattgtacaccatct
cccagcaagacaccagctgaaaacccattgaacattatgttgaacattgtcaaaaacgaa
ttacaggaaccctgtgaaagtccaaaagttaaggaagagcaaattgacaccccaccagct
tgtacagaggaaaaccttgcaacacccactgaaattaaaacagaaaatgatacagttgag
tccgtttaa
DBGET
integrated database retrieval system
