Ochotona curzoniae (black-lipped pika): 121145997
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Entry
121145997 CDS
T11174
Symbol
AFDN
Name
(RefSeq) afadin isoform X1
KO
K05702
afadin
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz04014
Ras signaling pathway
ocz04015
Rap1 signaling pathway
ocz04024
cAMP signaling pathway
ocz04517
IgSF CAM signaling
ocz04520
Adherens junction
ocz04530
Tight junction
ocz04670
Leukocyte transendothelial migration
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04014 Ras signaling pathway
121145997 (AFDN)
04015 Rap1 signaling pathway
121145997 (AFDN)
04024 cAMP signaling pathway
121145997 (AFDN)
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
121145997 (AFDN)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
121145997 (AFDN)
04530 Tight junction
121145997 (AFDN)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
121145997 (AFDN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_2
RA_3
PDZ_2
RASSF8-10_RA
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
121145997
NCBI-ProteinID:
XP_040821145
LinkDB
All DBs
Position
Unknown
AA seq
1835 aa
AA seq
DB search
MSAGGRDEERRKLADIIHHWNANRLDLFEISQPTEDLEFHGVMRFYFQDKAAGNFATKCI
RVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGERRLDIDEKPLVVQLNWNKD
DREGRFVLKNENDAAAPKKVQSNGPEKQEKEGVIQNFKRTLSKKEKKEKKKREKEALRQA
SEKEDRPLAGDDIENSRLAAEVYKDMPETSFTRTISNPEVVMRRRRQQKLEKRMQEFRSS
DGRPDSGGTLRIYADSLKPNIPYKTILLSTTDPADFAVAEALEKYGLEKENPRDYCLAQV
LLPPGAQHSDDRGAQELVLEDDECPLQIFREWPADKGILVFQLKRRPPDSAPAKVKKHGE
GKLLRGRERAEGPGTGSALPPEKLPYLVELSPGRRNHFACSSYHTGEDGSDSRDKPKLYR
LQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTHMDGVVTVTPRSMDAETFVDGQRISET
TMLQSGVKVQFGASHVFKFVDPSQDHMLAKRSVDGGLMMKGTRHKAGLVQETTFDLGGDV
HSGTALPTSKSSARLDGERAHSASGAVERGMVRPMVRAAQPADPGRREGRSQDASGPELV
LPASIEFRESSEDSFLSAIINYTNSSTVHFKLSPTYVLYLACRYVLSNQYRPDASPAERT
HKVIAIVNKMVSMMEGVIQEVDQVDQKQKNIAGALAFWMANASELLNFVKQDRDLSRVTL
DAQDVLAHLVQMAFKYLVHCLQSELSSFMPAFLDDPEEKSLQRPKIDDVLHTLTGAMSLL
RRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGAIIRQQLGHIEAWAEKQ
GLELAADCHLSRIVQATTLLTMDKYAPEDVPHVNSTCFKLNSLQLHALLQNYHCAPDEPF
IPAELIENVVAVAENTADELARSDGRDVQLEEDPDLQLPFLLPEDGYSCDVVRNIPSGLQ
EFLEPLCQRGFCRLIPHARSPGTWTIHFEGADYEDQLVRENTELAQPLRKEPEIITVTLK
KQNGMGLSIVAAKGAGQDKLGIYVKSVVRGGAADVDGRLAAGDQLLSVDGRSLVGLSQER
AAELMTRTSSVVTLEVAKQGAIYHGLATLLNQPSPMMQRISDRRGSGKPRPKSEGFELYN
SSAQNGSPGSPQMPWAEPSEPKKMPGDDRLTKNRADHRSSPNVANQPPSPGGKGAYASGA
AAKITSVSTGNLCTEEQPPAPRPEAYPIPTQTYTREYFTFPASKSQDRMAAPPSQWPGYE
DKPHVHMDSSHVSLAVQRVTRSQEELREDRAFQLERHRMESVMDRKADSDMWLNQSSSVE
SSTSSQEHLNHSSKPGTPASTLTKSGPGRWKTPAAVPMPAAPVAVSQPFRADLPPPPPPP
PAHYASDLDGIPVDLPLPPPPSTSQPGPQSAQVATAERKKREEQQRWYEKEKARLEEERE
RKRREQERRLGQMRTQALNPAPFSPLPAQQAKPEKPSTLQRPPETVIRELQPQQQPRTIE
RRDLQYITISKEELSSGDSLSPDPWKRDAKEKLEKQQQMHIVDMLSKEIQELQARPDRTA
EENDRLRKLMLEWQFQKRLQESKQKDEEDEEEEEEDVDTMLIMQRLEAERRARLQDEERR
RQQQLEEMQKREAEDRARLEEERRRQEEERAKRDAEEKRRQEEGYYSRLEAERRRQHEEA
ARRLLEPEEPGLCRPPLPRDYEPQGPAPAPGAPPPPPQRNTSYLKTQALAPDSLFTAKFV
AYSEEEEEAEEDCGLAAPNSYVGPTGTGIGAHSAYQDPREKHSKSHDTDPPGGSGAPENL
TFKERQRLFSQGQDVSNKVKASRKLTELENELNTK
NT seq
5508 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgggcggccgcgacgaggagcggcggaagctggccgacatcatccaccactgg
aacgccaaccggctggacctgttcgagatcagccagccgaccgaggatttggagttccat
ggagtgatgaggttttattttcaagataaagctgctggaaactttgctacaaaatgtatt
cgggtctccagcactgcgaccacccaggacgtgattgagacactggcagagaaatttcga
cctgacatgcgcatgctgtcctctccgaaatactccctctatgaggtgcatgtcagtgga
gaaagaagactggacatagacgagaagcctttggtcgtgcagctgaactggaacaaagat
gaccgggagggcaggtttgtcctgaagaatgagaacgatgcagctgctcccaagaaggtt
cagagcaacgggcctgagaagcaggagaaggaaggtgtgatccagaacttcaagaggacg
ttgtcaaagaaagagaagaaggaaaagaagaagagagagaaagaggccctgagacaggcg
tccgagaaggaggacaggcccctcgcaggggatgacattgagaattcccggctggctgcc
gaggtgtacaaggacatgcctgagaccagcttcacgcggaccatctccaaccccgaggtg
gtgatgcggcggcggaggcagcagaagttggagaagaggatgcaggagttccggagctca
gacgggcggcctgattcaggtggaacgttgagaatttatgcagacagtttaaagccgaac
atcccctacaagacaatcctgctgtccaccacggaccctgcagattttgctgtggccgag
gcgctggagaagtacggcctggagaaggagaaccccagggactactgccttgctcaggtt
ctgcttcctccgggagcccagcattctgatgacagaggtgcccaggaactggttctggag
gacgatgagtgcccgctgcagatcttcagggagtggcctgctgacaaagggatactggtg
ttccagctgaagaggaggccgccggactcggcccccgccaaggtgaagaagcacggtgag
gggaagctgctgcggggcagggagcgggccgagggccccggcactggctctgcccttccg
cccgagaagctgccctacctggtggagctgagcccagggagaaggaatcactttgcctgc
tccagctatcacactggtgaagatggttctgactccagggacaagccgaagctctaccgc
ctgcagctgagtgtgacggaggtgggcacagagaagtttgacgacaactccatccagttg
tttggcccggggattcagccccatcactgcgacctcacgcacatggacggcgtggtcacc
gtgacacccaggagtatggacgccgagaccttcgtggacggccagcgcatctccgagacc
accatgctgcagagtggtgtcaaagtacagtttggggcgtcccatgtgttcaagtttgtg
gaccccagccaggaccacatgctcgccaagagatccgtggacggaggcctgatgatgaag
ggtaccaggcacaaggcgggcctggttcaggagacaacttttgatttaggaggagatgtg
cacagtgggacagcgctgccaaccagcaagagcagcgcccgactggatggggagcgagcc
cattctgcctctggtgccgtggagcgaggcatggtgcggcccatggtgagggcggcgcag
cccgcggaccccggccgacgagaaggcaggtctcaggatgcctctgggcccgagctggtg
ctgcctgcaagcatcgagttcagggagagctctgaagattcatttttatcggccattatc
aattataccaatagttcaactgtccattttaaactgtcccctacttacgtcttgtacctg
gcctgccggtatgtgttgtccaatcagtaccggcctgacgccagccctgctgagcgcacg
cacaaggtcatcgcaatcgtcaacaagatggtgagcatgatggaaggagtcattcaggag
gtagaccaggtggaccagaagcagaagaacatcgcgggcgcgctggccttctggatggcg
aacgcatcggagctgctcaacttcgtcaagcaggaccgagacctgagccgcgtgaccctg
gatgcgcaggacgtgctcgcacacctggtgcagatggcgttcaagtacctggttcactgc
ctgcagtcggagctcagcagcttcatgccggccttcctggatgaccccgaggagaagagt
ctgcagagaccaaagatagacgacgtgctgcacacgctcacgggggccatgtccttgctg
cgccgctgccgggtcaacgccgccctcaccatccagctcttctcccagctcttccacttc
atcaacatgtggctcttcaacaggctggtgacggaccccgactctgggctctgctcccac
tactggggagcgatcatccgccagcagctgggccacatcgaagcctgggccgagaagcag
ggactcgagctggccgccgactgccacctgagcaggatcgtgcaggctaccactttactc
accatggataaatacgccccggaggacgtcccccatgttaacagcacctgcttcaagtta
aactccctgcagctgcacgccctgctgcagaactaccactgtgcgcccgacgagccgttc
atccctgcggagctgatagaaaacgtggtggctgtcgccgagaacaccgccgatgagctg
gcccgcagcgacgggcgggacgtgcagctagaggaggaccccgacctgcaactgcccttc
ctgttgccagaggacggctattcctgtgatgtggtcaggaacattcccagtggcctccag
gagttcttagagcccctgtgccagagaggattttgcaggttaatcccacacgcgcggtcc
ccgggcacttggacaatccactttgaaggtgccgattatgaagaccagcttgtgcgggag
aacacagaactggcccagcctctgcggaaggagcccgagatcatcaccgtgaccttgaag
aagcagaatggaatgggcctcagcattgtggcagcaaagggggccggccaggataagctg
ggcatctacgtgaagtctgtcgtgcgaggaggcgctgccgacgtggatggacggctggcc
gcaggggatcagctgctgagtgtggacggccggagtctggtgggactctctcaggaaagg
gctgcagaactcatgacaaggacgagttccgtggtgacgctcgaagtggcaaagcaaggc
gccatctaccacgggctggccacactcctcaatcagccctcccccatgatgcagagaatt
tcagatcgccgtggctcaggtaaacctcggccgaagagtgagggttttgagctgtataac
agttctgctcaaaacgggtcacctggaagtccccagatgccctgggcggaacccagcgag
ccgaagaaaatgcccggtgatgacagattgacgaaaaaccgcgccgatcaccgctccagc
cccaatgttgcaaatcagccccccagccccggagggaagggcgcctatgcctctggagct
gcagctaagataacgtccgtctccacggggaacctctgtaccgaggagcagccacctgca
ccccgacctgaagcttaccccatccccactcagacctacacccgggagtacttcaccttc
ccggcctccaagtcgcaggaccggatggcggctcctccgagccagtggccaggctatgag
gacaagccgcacgtccacatggacagcagccacgtgagcctcgcggtgcagcgcgttaca
cgttcccaggaggagctgagggaggacagggccttccagcttgagcgacaccgcatggag
tccgttatggaccgcaaggccgacagcgatatgtggttaaaccagagctcctccgtggag
tccagcacctccagccaggagcacctgaaccattcctccaagcccgggactccggcctcc
acactcaccaaaagcgggccaggccggtggaaaacgcccgctgccgtgcccatgccagcc
gccccggtggccgtctcacagcccttccgagcagacctgcctccgccgccccctccacct
ccagcccactatgccagtgacttggatggaattcctgtggatttacctctgcccccacct
ccttctaccagccagccaggaccgcagtctgcccaggtggccactgcagagcgcaagaag
agggaggagcagcagcggtggtacgagaaggagaaggctcgcctggaggaggaacgtgag
cggaagcgccgggagcaggagcgcaggctgggccagatgcgcacccaggccctgaacccg
gccccgttctcgcctctgcccgctcagcaggcgaagcccgagaaaccctccacgctccag
aggccccccgagacggtcatccgggagctgcagccgcagcagcagccgcgcaccattgag
cgccgggacctgcagtacatcaccatcagcaaggaggagctgtcctctggggacagtctg
tctcctgacccctggaagcgtgatgccaaggagaagctggagaagcagcagcagatgcac
atcgtggacatgctgagcaaggagatccaggagctgcaggccaggcccgaccgcactgcc
gaggagaacgaccgactgcgcaagctcatgctggagtggcagttccagaagcggctgcag
gagtcgaagcagaaggacgaggaggacgaggaggaggaggaggaggacgtagacaccatg
ctcatcatgcagcgtctggaggccgagcgcagagcccggttgcaggatgaggagcgcagg
cggcagcagcagctggaggagatgcagaagcgggaagcggaggaccgcgcccggctggag
gaggagcggcgccgccaggaggaggagcgagccaagcgagacgctgaagaaaagaggcgt
caggaagaaggctactacagtcgcctggaagccgagagacgcagacagcacgaggaggct
gcgcgcaggctgctggagcccgaggaaccagggctctgccgccccccgctgccccgggac
tatgagccccagggcccggcccctgcccctggcgccccgccgcccccgccccagcggaac
acctcctacctcaagacccaggctctggccccggactcgctgttcactgccaagtttgtt
gcctacagtgaggaagaggaggaggcggaggaggactgcggcctagcagcaccaaactct
tacgtgggacctaccgggacgggcattggagcccacagtgcttaccaggatccgcgagag
aaacactcgaaaagccacgacacggatccacccggtggctctggagcccctgagaacttg
acattcaaggaacgccagcgtctcttctcgcagggtcaggatgtgtccaataaagtgaaa
gcgtctcgcaaattaacagaactggagaacgaactgaacaccaagtga
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integrated database retrieval system
