Ochotona curzoniae (black-lipped pika): 121147157
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Entry
121147157 CDS
T11174
Symbol
NUP54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03013
Nucleocytoplasmic transport
ocz05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121147157 (NUP54)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
121147157 (NUP54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocz03019
]
121147157 (NUP54)
Messenger RNA biogenesis [BR:
ocz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121147157 (NUP54)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup54
Nup54_C
Phage_tail_terminator_7
XhlA
Motif
Other DBs
NCBI-GeneID:
121147157
NCBI-ProteinID:
XP_040822856
LinkDB
All DBs
Position
Unknown
AA seq
562 aa
AA seq
DB search
MAFNFGAPSGTSGTAAATAAPTGFGGLETANPTASGFNFGGFGLTANPAVNFNIGNFGVS
TTSATPFNFGNSLASAGGFGGFGTTSTTSGSAFSFSAPANTGTTGLFSQNKGFGFGTGFG
TTTGTSTGLGTGLGTGLGFGGFNTQQQQQPSRTSLGGLFSQPTQAPAQSNQLINTASALS
APTLLGDERDAILAKWNQLQAFWGAGKGYFNNNIPPVEFTQENPFCRFKAVGYSCMPNNK
DEDGLVVLVFVKKEADIRSQQQQLVESLHKVLGGNQTLTVNVEGIKTLPDDQTEVVIYVV
ERSPNGTSRRVPATTLYAHFEQVSIKTQLQQLGVTLSMTRTELSPAQIKQLLQNPPAGVD
PIIWEQAKVDNPDSEKLIPVPMVGFRELLRRLKVQDQMTKQHQTRLDIISEDISELQKNQ
TTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQCELNAPT
QFKGRLNELMSQIRMQNHFGAVKTEERYYIDADLLREIKQHLKQQQEGLSHLISIIKDDL
EDIKLVEHGLNESIHIRGGVFS
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggctttcaatttcggggctccgtcgggcacctcgggcaccgctgcagccactgcggct
cccacgggatttggtgggcttgagactgccaaccccaccgccagtgggtttaattttggg
ggtttcggattaactgctaatcctgcagtgaactttaatattgggaatttcggtgtttct
accacctcggcgactccgttcaattttggtaacagtctggcaagcgcaggtgggtttgga
ggttttggcacaacatctacaacttcaggttctgcgttcagtttttctgctccagctaac
acaggcacaacaggactgttctctcagaacaaaggttttggatttggtactggtttcggc
acaaccacaggaactagcactgggctgggcactggcctgggcaccggcctgggattcgga
gggtttaacacccagcagcaacagcagccatctaggacctcgttaggtggtctcttcagt
cagcccacacaagctcctgctcagtccaaccagctgatcaatactgcaagtgctctttct
gctccaacgttactgggagatgagagagatgctattttggcaaaatggaatcagctgcag
gccttttggggcgcgggaaaaggatatttcaacaataacattccgccagtggaattcaca
caggaaaatcccttctgccgatttaaggcagtaggttatagttgtatgcccaataataaa
gatgaagatggcctagtagttttagtttttgtcaaaaaggaagcagatattcgaagtcag
cagcagcagttggtggaatcattgcataaggttcttggaggaaaccagacccttacagtg
aacgtggagggcattaagacgctgccggatgatcagacagaagttgttatttatgttgtt
gagcgttctccaaatggtacttctagaagagttccagccacgacactctatgctcatttt
gaacaagtcagtataaaaacgcaattgcagcaactgggtgtaaccctttcaatgactaga
acagaactttctcctgcacagatcaagcagcttttacagaatcctcctgctggtgttgat
cctattatctgggaacaagccaaggtagataaccctgattctgaaaagttaattcctgtg
ccaatggtgggcttcagagaacttctccggagattgaaggttcaagaccagatgacgaag
caacatcaaactagattagatatcatatctgaagatattagtgagctgcagaagaaccaa
actaccacgatggccaagatcgcacagtacaagaggaagctcatggacctctcgcatcgg
acattgcaggtcctaatcaagcaggaaattcaaaggaagagcggttatgccatccaggcg
gatgaagagcagttgcgagtgcagctagatacaatccagtgtgagctaaacgcacctacc
cagtttaagggccgacttaacgagctcatgtcccaaatcaggatgcagaatcattttgga
gcagtgaaaactgaagagaggtactacatagatgcagatctgctacgagaaatcaagcag
catttgaaacaacagcaggagggcctgagccacttgattagcatcataaaagacgatctg
gaagacatcaaattggtggaacatggattgaatgaaagcatccacatcagaggcggtgtt
tttagttga
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