Ochotona curzoniae (black-lipped pika): 121147201
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Entry
121147201 CDS
T11174
Symbol
PCDH18
Name
(RefSeq) protocadherin-18 isoform X1
KO
K16499
protocadherin delta 2
Organism
ocz Ochotona curzoniae (black-lipped pika)
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocz04515
]
121147201 (PCDH18)
Cell adhesion molecules [BR:
ocz04515
]
Cadherins
Protocadherins
121147201 (PCDH18)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
BBS1
ATG31
G1_gp67_N
Syndecan
Cadherin_C_2
PAH
DUF3418
Motif
Other DBs
NCBI-GeneID:
121147201
NCBI-ProteinID:
XP_040822919
LinkDB
All DBs
Position
Unknown
AA seq
1135 aa
AA seq
DB search
MHQMDTKMHFRFAFALLMISFNLCVLGKNLKYSVYEERAIGSVIARLSEDVADVLSKLPN
PSAVRFRAMQRGNSLLVVNESNGEISIGATIDREQLCQKNLNCSIEFDVITLPTEHLQLF
HIEVEVLDINDNSPQFSRSVIPIEISESAAVGTRIPLDSAFDPDVGENALHTYSLSANDF
FNIEVRTRTDGAKYAELIVVRELDRELKSSYELQLNASDMGVPQRSGSSILKISISDSND
NSPAFEQQSYLIHLLEDSPVGTLLLELNATDPDEGANGKIVYSFSSHVSPKIIETFKIDS
ERGHLTLFKQVDYELTKSYEIDVQAQDLGPNSIPAHCKIIIKVVDVNDNKPEININLMSP
GKEEISYIFEGDPIDTFVALVRVQDKDSGLNGEIVCKLHGHGHFKLQKTYENNYLILTNA
TLDRERRSEYSLTVIAEDKGTPSLSTVKHFTVQVNDINDNPPHFQRSRYEFVISENNSPG
AYITTVTATDPDLGENGQVTYTILESFILGSSITTYVTIDPSNGAIYALRIFDHEEVSQI
TFVVEARDGGSPKQLVSNTTVVLTIIDENDNVPVVIGPALRNDTAEISIPKGAESGFLVT
RIRAIDRDSGVNAELSCSIVAGNEENIFVIDPRTCDIHTNVSMESFPYTEWELAVIIQDK
GNPQLHTKVFLKCIIFEHAESVTSTAMTSVSQASLDVSMIIIISLGAICAVLLVIMVLFA
TRCNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTINGTLPIRSHHRSSPSS
SPTLERGQMGSRQSHNSHQSLNSLVTISSNHVPENFSLELTHATPAVEQVSQLLSMLHQG
QYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRDSPIDRLLGEGF
SDLFLTDGRIPAAMRLCTEECRVLGHSDQCWMPPLPSPSSDYRSNMFIPGEEFPTQPPQQ
PAHLSLDEEASPAECGGEKKKSFSTFGKDAPSDEDAADTSTSSLLSEMSSVFQRLLPPSL
DTYAEGSDAERANSLERRKGPLAAKGAGYPQGVAAWAASTHFQNPASSSGPALGAHSSVQ
PSSKWLPAMEEIPENYEEDDFDNVLNHLSDGKHELMDASELVAEINKLLQDVRQS
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgcaccaaatggatactaaaatgcactttaggtttgcgtttgcactcctgatgatatct
ttcaacctctgtgtcctgggcaagaatttaaaatacagtgtttatgaggaacgggccatt
ggatcagtaattgcaagactatcagaggatgtggctgatgttttgtcgaagctacctaat
ccttctgccgttcgctttcgagccatgcaaaggggaaattctcttctggtcgtcaatgag
agtaacggggaaatcagcataggggctaccattgaccgggaacagctgtgccagaaaaac
ttgaactgttccatagagtttgatgtgatcactttacccacagagcatctgcagcttttt
catatagaagtggaagtgctggatattaatgataattctccccagttctccagatctgtc
atccctattgagatatctgagagtgcagccgttgggacgcgcattcccctggacagtgca
ttcgatccagatgttggggaaaatgccctccacacatactccctctctgccaatgacttt
tttaatatcgaggttcggaccaggacggacggagccaagtatgcagaactcatagtggtc
agagagttggatcgggagctgaagtcaagctatgagcttcagctcaacgcctcggacatg
ggagtgcctcagaggtctggctcgtccattctgaaaatcagcatttctgactctaacgac
aacagtcctgcgtttgaacaacagtcttacctaatacacctcttagaagactctcccgtg
ggcactctgctcctggagctgaatgccactgacccagatgagggcgctaatgggaaaatt
gtgtattctttcagcagtcatgtgtctcccaaaattatagagacttttaaaattgattcg
gaaagaggacatttgacgcttttcaagcaagtggattatgaactcaccaaatcatatgaa
attgatgttcaggcccaagatttgggtccaaactcaattccagctcattgcaaaattatc
attaaggttgtggatgtgaatgacaataagcctgaaattaacataaacctcatgtcccca
ggaaaagaagaaatatcttacatatttgaaggggatcctattgacacatttgttgccttg
gtcagggtccaggacaaggattctgggttgaatggagaaattgtttgtaaacttcatggt
catggtcactttaaacttcagaagacttatgaaaacaattatttaatcttgaccaatgcc
acactggatagagaaaggagatctgaatatagtttgactgtaatcgctgaagacaagggg
acacctagtctttccacagtcaaacattttaccgttcaagtcaacgacataaatgacaat
ccaccccactttcagaggagccggtatgaatttgtaatctcagagaataactcaccaggg
gcatatattaccaccgttacagctaccgatcctgatcttggagaaaatggccaagtgaca
tacaccattctggagagttttatcttgggtagttccataaccacctatgtcactattgac
ccatccaatggagccatctatgccctcaggatctttgaccatgaggaagtgagtcagatc
acttttgtggttgaagcaagggatggaggaagtccgaagcaacttgtaagcaataccacc
gtggtactcaccatcattgatgaaaatgacaacgtccctgtggttatagggcctgcactg
cgcaacgatacagcagaaatctccatccctaaaggagctgaaagtggatttcttgtcaca
aggatacgggcaattgacagagactctggggtgaatgctgaactcagctgctccatagta
gcaggtaatgaggagaatatatttgtaattgatccacgaacatgtgacatccataccaat
gtgagcatggaatcttttccctacacagaatgggaacttgctgttatcatccaggacaaa
ggcaatcctcagctgcataccaaagtctttctgaaatgcatcatctttgaacacgcagag
tcagtgacaagtacagccatgacctcagtaagccaggcatctttagatgtctccatgatt
ataattatttccttaggagcaatttgtgcagtgttgttggtcattatggtattgtttgcg
acaaggtgtaacagagaaaagaaagacactagatcctacaactgcagagtggctgaatcg
acctaccagcaccatccaaaaagaccgtctagacagatacacaaaggtgacatcacactg
gtacccaccatcaacggcactttgcccatcagatcacatcacagatcgtctccatcttca
tctccgaccttagaaagagggcagatgggcagccggcagagtcacaacagccaccagtcg
ctcaacagtttggtgacaatctcatcaaaccacgtgccagagaatttctccctagaactc
acgcacgccactcctgctgttgagcaggtttctcagctcctttcaatgcttcatcaggga
caatatcagccaaggccaagttttcgaggcaacaaatactccaggagctataggtatgcc
cttcaagacatggacaagttcagcttgaaggacagtggacgtggtgacagtgaagcagga
gacagtgattatgatttggggcgagattccccaatagatagactactgggagaaggcttc
agtgacctgttccttacagatggaagaatccctgcagccatgaggctgtgcacggaagaa
tgcagagtcctgggacactcggaccagtgctggatgccacctctgccctcgccgtcctct
gactacaggagcaacatgttcattccgggcgaggagttccccacccagcccccgcagcag
cccgcacacctgagcctcgacgaggaagcttcacctgcagagtgtggaggcgaaaaaaag
aagagcttttccactttcgggaaggacgccccgagcgacgaggacgcggcggacaccagc
acctcgtctctgctctcggagatgagcagcgtgtttcagcgtctgctgccgccctcgctg
gacacctacgccgagggcagcgacgccgaacgggctaactcgctggagcgccgcaaggga
ccgctggcggccaagggcgcgggctacccgcagggcgtggcggcctgggcggccagcacg
cacttccaaaaccccgccagcagctcggggcccgcgctgggcgcgcactccagcgtgcag
ccctcgtccaagtggctgccggccatggaggagatcccggagaactacgaggaagatgac
tttgacaatgtgctcaaccacctgagcgacgggaagcacgaactcatggacgccagcgag
ctggtggcggagatcaacaaactgctgcaggatgtgcgccagagctag
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