Ochotona curzoniae (black-lipped pika): 121148125
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Entry
121148125 CDS
T11174
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03013
Nucleocytoplasmic transport
ocz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121148125 (UPF2)
03015 mRNA surveillance pathway
121148125 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocz03019
]
121148125 (UPF2)
Messenger RNA biogenesis [BR:
ocz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121148125 (UPF2)
mRNA cycle factors
P-body specific factors
121148125 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
121148125
NCBI-ProteinID:
XP_040824099
LinkDB
All DBs
Position
Unknown
AA seq
1263 aa
AA seq
DB search
MPAERKKPASMEEKESLLNNKEKDCSERRPVSSKEKPKDDLKVTAKKELSKVPEDKKKKL
EDDKRKKEDKERKKKEEDKVKAEEEEKKKHEEEERKKQEEQAKRQQEEEAAQLKEKEESL
QLHQEAWERHQLRKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTITEQQRDS
LSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLLQVWKKHF
EARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRESHTHVSVV
ISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFTSLTKHLK
RDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLDENMPDLP
QDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAILFKDNEK
SCQNKDSNKEDSKEAKESKDNKEVSTPDDLELELENLEINDDNLELEGGDEAEDLTKKLL
DEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRKKLVRAL
FIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIETKNKTVR
FIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPDSHLRTSVLL
EQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTT
EKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDG
VLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPS
SLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPF
PIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLGLVNDKDSKDSMTEGEN
LEEDDEEEEGGAETEEQSGNESEVNDPEEEEGSDDEEEGEEEEEENTDYLTDSNKENETD
EENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAIPLHLKSQ
LKKGPPLGGGEGEAESSDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQQAEQEER
MRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGG
RRR
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagccagcaagtatggaagaaaaagaatctttactaaacaac
aaggagaaagactgtagtgaaaggcggccagtgagcagcaaggagaagcctaaagacgat
ctcaaggttactgccaagaaggagctcagtaaggtccctgaagacaagaagaagaaactg
gaagatgataagagaaaaaaggaagacaaggagcgcaagaagaaggaagaagacaaggtg
aaggcagaggaagaagaaaaaaagaagcatgaagaggaagagaggaaaaagcaagaagag
caggctaaacgccagcaggaggaagaagctgctcagttgaaagaaaaggaggaatctctt
cagcttcatcaggaagcttgggaacgacatcagctaagaaaggaacttcgtagcaaaaac
caaaatgctccagacaaccggccagaggaaaacttctttagccgcctagattcaagtttg
aagaaaaatactgcttttgtcaagaaactaaaaactattacagagcaacagagagactcc
ttgtcccatgattttaatggcctgaatttaagcaaatacattgcagaagccgtagcttct
attgtggaagccaagctaaaaatctccgatgtgaactgtgctgtgcacctgtgctctctc
tttcaccaacgctatgctgactttgccccatcacttcttcaggtctggaaaaagcatttt
gaagcaaggaaagaggaaaaaacacctaacattaccaaattaagaactgatttgcgtttt
atcgcagaattgacaattgttgggatttttacggacaaggagggcctttccttaatatat
gaacagctaaaaaatattattaatgctgatcgggaatctcacactcatgtttcggtggtg
attagtttttgtcgacattgtggtgatgacattgctggactcgtaccaaggaaagtaaaa
agtgctgcagagaagtttaatttgagttttcctcctagtgagataataagtccagagaaa
caacagcctttccagaaccttttgaaagagtactttacgtctttgaccaaacacctgaaa
agggaccacagggagctccagaatactgagagacaaaacaggcgtattcttcattctaaa
ggagagctaagtgaagatagacataaacagtatgaggaattcgccatgtcttatcagaaa
ctgctggccaattctcagtccttagcagacctcttggatgaaaatatgccagatcttcct
caggacaaaccaacaccagaagagcatggacctggaattgatatatttacgcctggtaaa
cctggagaatatgacttggaaggtggcatatgggaagatgaagatgctcggaatttttat
gagaacctcattgatttgaaagcttttgttccagccatcttgtttaaagacaatgaaaaa
agttgtcagaataaagattctaataaagaggattccaaagaggcaaaagaatctaaggat
aataaggaggtgtcaactcctgatgatctggaacttgagctggagaatctggaaattaat
gatgacaacttggagttagagggtggagatgaagctgaggatcttacaaagaaactcctt
gatgaacaagaacaagaggatgaagaagccagcactgggtctcacctcaagctcatagtg
gatgctttcctacagcagttgcccaattgtgtcaaccgggatctgatagacaaggcagca
atggatttttgcatgaacatgaacacaaaagcaaacagaaagaagttggtacgggcactc
ttcatagttcctagacaaaggctggatttgttaccattttatgcaagattggttgccaca
ttgcatccctgcatgtctgatgtagcagaggatctttgttccatgttgaagggggatttc
agatttcatgtacgtaaaaaggaccagattaatattgaaaccaaaaataaaactgttcgt
ttcattggagaattaaccaagtttaagatgttcacaaaaaatgacacattacattgctta
aagatgcttctgtcagacttttctcatcaccatattgaaatggcctgcactctcctggag
acatgtggacgatttcttttcagatccccagactcacacctaaggaccagtgtactgttg
gaacaaatgatgagaaagaaacaagccatgcatcttgatgcaagatatgtcacaatggtg
gagaacgcatattactactgcaacccccctccagctgaaaagacagtaaaaaagaaacgt
cctcctctccaggagtatgtgcggaaacttctgtacaaagacctttctaaggttaccact
gaaaaggttttgagacagatgcggaagttgccctggcaggaccaagaagtgaaagattat
gttatttgttgtatgataaacatttggaatgtaaaatataacagtattcactgtgtagcc
aacctcttagcaggactagtgctctaccaagaagatgttgggatccacgttgtggatgga
gtcttagaagatatccgattgggaatggaggtcaaccaacctaaatttaatcagagacgt
atcagcagcgccaaattcttgggagagctgtataattaccgcatggtggaatcagctgtt
atttttaggactctgtattcttttacttcctttggtgttaatcctgatggttctccaagt
tccctggaccctcctgagcatcttttcagaattcgacttgtttgcactattttggatacc
tgtggccaatactttgacagaggttccagtaaacgaaaactcgattgcttccttgtatat
tttcagcgttatgtttggtggaagaaaagtttggaggtttggacaaaagaccatccattt
cctattgatatagattacatgatcagtgatacactagaactgctcagaccaaagatcaaa
ctctgtaattctctggaagaatccatcaggcaggtacaagacttggaacgtgaattctta
ataaaactaggcctagtaaatgacaaggattcaaaagattctatgactgaaggggaaaat
cttgaagaagatgatgaagaagaagaaggaggtgctgaaacagaagagcaatctggaaat
gagagtgaagtcaatgacccagaagaagaggaaggctctgatgatgaggaggagggagaa
gaagaggaagaagagaacacagattaccttacagattccaataaggagaatgagactgat
gaagagaacactgaggttatgattaaaggaggtggactgaagcatgtaccttgtgtagaa
gatgaggactttattcaagctctggataaaatgatgctggaaaatcttcagcaacgaagc
ggagaatctgttaaagtgcaccagcttgatgttgctattcctttgcatctcaaaagccaa
ttgaagaaaggtcccccgctgggtggtggggaaggagaggcagagtcctcggacaccatg
ccgttcgtcatgctgacaagaaaaggcaataaacaacagtttaagatccttaatgtgccc
atgtcttcccaacttgcggcaaatcattggaaccagcaacaagcagaacaggaagagaga
atgagaatgaaaaagctcactctagatatcaatgaacggcaagaacaagaagattatcaa
gaaatgttacagtctcttgcacagcgtccggctccagcaaacaccaatcgtgagcgacgg
cctcgttaccaacatccaaagggagcacctaatgcagatctaatctttaagactggtggg
aggagacgttga
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