Ochotona curzoniae (black-lipped pika): 121149011
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Entry
121149011 CDS
T11174
Symbol
VPS18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz04140
Autophagy - animal
ocz04142
Lysosome biogenesis
ocz04145
Phagocytosis
ocz04148
Efferocytosis
ocz05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
121149011 (VPS18)
04142 Lysosome biogenesis
121149011 (VPS18)
04140 Autophagy - animal
121149011 (VPS18)
04148 Efferocytosis
121149011 (VPS18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121149011 (VPS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocz04131
]
121149011 (VPS18)
Membrane trafficking [BR:
ocz04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
121149011 (VPS18)
Hops complex
121149011 (VPS18)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
VPS18_RING_C
Clathrin
zf-RING_5
zf-C3HC4_2
zf-RING_16
KNOX2
zf-RING_Vps41
zf-ANAPC11
zf-RING_2
zf-RING_UBOX
zf_RING_Vps8
zf-rbx1
WD40_Prp19
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
121149011
NCBI-ProteinID:
XP_040825351
LinkDB
All DBs
Position
Unknown
AA seq
973 aa
AA seq
DB search
MASILDEYEDSLSRSAALQPGCPTVGIPHSGYVTAQLEKEAPIFTKQRIDFTPPERITSL
VVSCNQLCMSLGKEALRRIDLSKPNELNQVDLGRKDDAQVHKMFLDHTGSHLLIALSSTE
VLYLNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGQIFEAELSASEGG
LFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPDGRGFVIATTRQRLFQFIGRTAEGAE
AQGFSGLFAAYTDHPPPFREFPSNLGYSELAFYTPKLRSAPRAFAWMMGDGVLYGALDCG
RPDSLLSEERVWEYPEGVGPGASPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL
EKFGPLKHMVKDTSTGQLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPD
CLDTVLAREADFCFRQQRYLESARCYALTQSYFEEIALKFLEARQEEALAEFLQRKLASL
KPAERTQATLLTTWLTELYLSRLGALQGDAEALPLYRETRERFRAFLSSPRHKEWLFASR
ASIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSP
ILIRHIPRQLVDAWIEMGSRLDARQLIPALVNYSQGGETQQVSQAIRYMEFCVNVLGETE
QAIHNYLLSLYARGQPASLLAYLEQAGSSPHRVHYDLKYALRLCAEHGHHRACVHVYKVL
ELYEEAVDLALQVDVDLAKQCADLPEDDEELRKKLWLKIARHVVQEEEDVQTAMACLASC
PLLKIEDVLPFFPDFVTIDHFKEAICSSLNAYNHHIQELQREMEEATASAQRIRRDLQEL
RGRYGTVEPQDKCAACDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLPAYKQARLEELQR
KLGASLPPAKGPTRAKEAEAGAAAVGPSREQLKADLDELVAAECVYCGELMIRSIDRPFI
DPQRYEEEQLSWL
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccatcctggatgagtacgaggattcattgtcccgctctgccgccttgcagccc
ggctgccccaccgtgggcatcccccactcggggtacgtgactgcgcagctggagaaagaa
gcacccatcttcacaaagcaacgcatcgacttcacacctcctgagcggatcaccagcctg
gtggtatcctgcaaccagctgtgcatgagcctgggcaaggaggcgctgcgccgcattgac
ctgagcaagcctaatgaactcaaccaagtggatctggggcgcaaggatgatgcccaagtt
cacaaaatgttcctggaccatactggctctcacctgctcattgcattgagcagcacagag
gtcctgtacttgaaccgcaatggacagaaggtacggccactggcgcgctggaaggggcag
ctagtggagagtgtgggttggaacaaggccctgggcactgagagcagcacgggtcccatc
ctggtgggcactgcccagggccagatctttgaagcggaactctcagccagcgagggcgga
ctcttcggccctgctcccgacctctacttccgtcccctatacgtgctcaatgaagaaggg
ggtccagcgcctgtgtgctcccttgaggctgagcggggtcctgatgggcgcggcttcgtc
attgccaccactcggcaacgcctcttccagttcattgggcgaacagctgagggggccgag
gcccagggcttctcgggactctttgcggcctatactgaccacccgcccccgttccgggag
tttcccagcaacctgggctacagtgagttggccttctatacccccaagctgcgctctgct
ccccgggccttcgcctggatgatgggggacggtgtgctgtatggggcgctggactgtggg
cggcccgattccctactgagcgaggagcgagtctgggagtaccctgagggagtcggaccc
ggtgccagcccacccctcgccatcgtgttgacccagttccacttcctgctgctgctggcg
gaccgtgtggaggcagtatgcacgctgacaggacaggtggtgcttcgggaccacttcctg
gagaagtttgggccgctgaaacacatggtgaaggacacatccacgggccagctgtgggcc
tacaccgagcgtgccgtcttccgctaccacgtgcagcgggaagcccgcgacgtgtggcgc
acctacctggacatgaatcgctttgacctggccaaggagtactgccgtgagcggcccgac
tgcctggacaccgtcctggcccgcgaggccgacttctgcttccgccagcagcgctatctg
gagagcgcccgctgctacgcgctcacccagagctactttgaggagatcgccctcaagttt
ctggaggcccggcaggaggaggcgctggccgagttcctgcagcgcaagctggccagcttg
aagccggctgagcgcacacaggctacactactgaccacatggctgaccgagctctacctg
agccggcttggggccctgcagggcgacgccgaggccctgcccctctaccgggagacccgc
gagcgcttccgggccttcctcagcagcccccgccacaaggagtggctatttgccagccgg
gcatccatccacgagctactggccagccatggggacacggagcatatggtgtactttgcg
gtgatcatgcaagactatgagcgcgtggtggcctaccactgccagcatgaggcctacgag
gaggccctggccgtgctcgcccgccaccgggacccccagctcttctataaattctcaccc
atactcatccgccacatcccccgtcagctggtggatgcctggattgagatgggtagtcgc
ctggatgcccggcagctcatccctgccttggtgaactacagccagggtggtgagacccag
caggtgagccaggccatccgctacatggaattctgcgtgaatgtgcttggggagaccgag
caggccattcacaactacctgctgtcactgtatgcccgtggccagccggcctcgctgctg
gcctaccttgagcaggctgggagcagccctcaccgagtgcactacgacctcaagtatgca
ctgcgtctctgtgctgagcatggccatcaccgcgcctgcgtgcacgtctacaaggtcctg
gagctgtatgaggaagccgtggacctggccctacaggtggacgtggacctggccaagcag
tgcgcggacttgcctgaggatgatgaggagctgcgcaagaagctgtggctgaagattgcg
cggcatgtggtgcaggaggaggaggacgtgcagactgccatggcctgcctggccagctgc
cccttgctcaagattgaggacgtactgcccttcttcccagacttcgtcactatcgaccac
ttcaaggaggccatttgcagctcgctgaacgcctacaaccaccacatccaggagctgcag
cgggagatggaggaggccacagccagtgcccagcgcatccggcgcgacctgcaggagctg
cggggccgctacggcactgtggagccacaggacaagtgtgccgcctgcgacttcccctta
ctcaaccgccctttctatctcttcctgtgtggccacatgttccatgcagactgcctgctg
caggccgtgcggcctggcctgcccgcctacaagcaggcccggctggaggagctacagcga
aagctgggggcctcactgccccctgccaagggccctacccgggccaaggaggccgaggca
ggagctgccgccgtggggcccagccgcgagcagctcaaggctgaccttgatgagctggtg
gccgctgaatgcgtgtactgtggggagctgatgatccgctccatcgaccggcccttcatc
gacccgcagcggtatgaggaagagcagctcagctggctctag
DBGET
integrated database retrieval system
