KEGG   Ochotona curzoniae (black-lipped pika): 121150347
Entry
121150347         CDS       T11174                                 
Symbol
POLR2D
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4 isoform X1
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
ocz  Ochotona curzoniae (black-lipped pika)
Pathway
ocz03020  RNA polymerase
ocz03420  Nucleotide excision repair
ocz05016  Huntington disease
Brite
KEGG Orthology (KO) [BR:ocz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    121150347 (POLR2D)
  09124 Replication and repair
   03420 Nucleotide excision repair
    121150347 (POLR2D)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05016 Huntington disease
    121150347 (POLR2D)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ocz03021]
    121150347 (POLR2D)
   03400 DNA repair and recombination proteins [BR:ocz03400]
    121150347 (POLR2D)
Transcription machinery [BR:ocz03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     121150347 (POLR2D)
DNA repair and recombination proteins [BR:ocz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      121150347 (POLR2D)
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4 Maelstrom
Other DBs
NCBI-GeneID: 121150347
NCBI-ProteinID: XP_040827127
LinkDB
Position
Unknown
AA seq 142 aa
MAAGGVDPRAGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEV
FMKTLTYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEG
RFEDEELQQILDDIQTKRSFQY
NT seq 429 nt   +upstreamnt  +downstreamnt
atggccgctggtggcgtggatccgcgagcaggcgacgtcgaggaggatgcctcacagctc
atctttcccaaagagtttgaaacggctgagacacttctcaattccgaagtgcacatgctt
ctggagcaccgcaagcagcagaacgagagcgcagaggacgagcaggagctctccgaggtc
ttcatgaagactctgacctacactgcccgcttcagtcgtttcaaaaacagagagaccatc
gccagtgtccgaagcttgctgctccagaagaagctgcataagtttgagttggcctgtctg
gccaacctctgtccagagactgcggaggagtccaaggccctgatcccgagcctggagggg
cggtttgaggatgaggagctgcaacagatcctcgacgatatccagaccaagcgcagcttt
cagtattaa

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