Ochotona curzoniae (black-lipped pika): 121151608
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Entry
121151608 CDS
T11174
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03440
Homologous recombination
ocz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121151608 (PALB2)
03460 Fanconi anemia pathway
121151608 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocz03400
]
121151608 (PALB2)
DNA repair and recombination proteins [BR:
ocz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
121151608 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
121151608 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
121151608
NCBI-ProteinID:
XP_040829131
LinkDB
All DBs
Position
Unknown
AA seq
1104 aa
AA seq
DB search
MEEPPAKPLSCEEKEKLKEKLALLKKEYSKTLARLQRSQRAGKAKNSNKTAEEQEILPQV
NRSEPKNRVSPNNKLQINTHFGQETRAKASVALDVEPESFNPGDGPEKASYPQEAGDTPT
HFPCGVSDPDGEKQQNKLLGRRKQQQKKIFSQKREYFDTDPPVVSEKRLKELENDHSKNP
GSPTEIRIQLSSPKPELLDSPVPVTGSHSGGFIAPAAKPNRDADLLLRGNMCCDQHLERL
LPTDNCEHFIPGFENSSPVSPVCLKAQGKKQTDLTDNPGVGKAVSPSSQLPKSTNCQAGN
SCPKNEVTDNNLQANRKQNVEQNHAQNSVSSPGHSLDGNNASLQENDAVTQSESPSSKTA
SASTENPIDSCTVVEGLPFPAEYYVRTTRSMSACQRKVALEAVIQNHLGTRRKEFKSKRK
EATDRLKHSCKATEQSEIRMSDACAGTSSESPSRKLVSLTAASSPTGRVEGSKISRKAVT
RPPNRRHRRKRKLVCTPPLDHELPLPTCNISDVNGSEEEVTSHKNRDNKAINHGDRVKRC
ELPAEDFGCLQLENLKLCSEATREPFGSKLCRERLFQEDNCLMEELTPKPIDTEMEDVQE
EHGLFGRAHPSEPKLQNQNGRKGLSSSILLFTPSDTAEPDAPDRAAADVCSPVLPMLGTT
PAFGSQPYCEETSREGAGQACSPPQFSQVKGPVSPEGDSKHRDSSARVSGRQGQPTWDCN
SGPSATPPPVESLSVREDPLCGDPCQERHTRLVEQTEMADPSACDDSLNSHDLQLVSKLK
SASGSCSVDVSAMWWERAGVKESCIITACEYVVALWKPLDAKRWKKNYTWHFKEIPVLQI
VPVPDVCNLVCVALGNLEIRELRALLCPCDDKSDKQVLLKSGNIEAVAGLTKRRLVSSSG
TLDDQQVEVMTFAEDGGINEKHFLMPPEEAVTTFAEVQGMEETLLGTTGMSSIVIWNLKT
GQLLKKVHIDESYHGSVCHKAYSDMGLLFLVLNHPCAKDGQSLEKPVFQLIAINPKTSLN
VGVMLYCLPHGQAGRFLEGDVKDHFAAAVLTSGTIAIWDLLLGHCTALLPPVSDQNWSFV
KWSSTDSHLLAGQKDGNIFVYRCT
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcctcccgccaagcccctcagctgtgaagagaaggaaaagctaaaggaaaaa
ttagcattattgaaaaaggaatacagcaagactctagcgcggcttcagcgttcccaaaga
gctggcaaggctaagaattctaacaagacagcagaagaacaggaaatcttgccacaagta
aaccgctcagaacctaaaaatagagtgtcacctaataacaagttacagatcaatacccat
ttcggccaagaaaccagggcaaaggcatctgtcgcacttgatgttgagcccgagtccttc
aaccctggagatggcccagagaaagcatcatatcctcaagaagctggtgataccccaaca
cattttccttgcggggtcagtgaccctgatggtgagaaacagcagaataagctgctaggg
cgaagaaagcagcaacagaagaaaatcttctctcagaagagagagtattttgacactgat
ccacctgtcgtgtctgaaaagaggctaaaggaactggaaaatgaccacagcaagaatccc
gggtcaccaactgagattagaattcaactttcaagtccgaagcctgaactccttgattct
ccagtgccagttacaggatctcacagcggcggattcattgcaccagctgccaagccgaat
agagatgctgatctactcttaagaggaaatatgtgctgtgatcagcatcttgaacgcctg
cttcctacagataactgtgaacattttattccaggcttcgaaaacagtagccctgtttca
cctgtttgcctgaaggcgcaaggcaaaaaacagactgacctgacagataacccaggagta
ggtaaagctgtaagtccaagtagccagctgcccaaaagcactaactgccaggccggtaat
tcatgtcctaagaatgaagtcactgacaacaacttacaagcaaataggaagcaaaatgta
gaacagaaccacgcacagaattctgtcagctctcccggtcacagtctggatggtaacaat
gcaagtcttcaggaaaatgacgctgtgactcagtcggagagtcccagctcaaaaacagct
tctgcttccacagagaatcccatcgattcatgcacagtggttgaaggcctgccgtttcct
gcagagtactatgttagaacaacacgaagcatgtctgcttgccagagaaaagtagccctc
gaggccgtaattcaaaatcatttagggaccaggaggaaagagtttaaaagcaaacgtaag
gaagcaacggatcgtttaaagcattcctgtaaagcaactgagcaaagtgaaatcaggatg
tcagacgcatgcgcaggaacaagttcagaaagtccttcacggaagctcgtgtcgttaact
gcggctagctctcccacgggacgcgttgaaggcagtaagatctctaggaaggcagttacc
cgaccacctaatagacggcacaggagaaaaagaaaactggtctgtaccccgccgttggat
catgaattacctttgccaacttgcaacatatcagatgttaatgggtccgaggaggaagtc
acctcgcacaagaatcgggacaacaaagcaattaatcatggtgacagagttaaaaggtgt
gaactacctgctgaagactttgggtgccttcagctggagaacctgaagctgtgctcagaa
gcaacacgtgagccttttgggtcaaaactgtgtcgggagaggcttttccaagaagataac
tgtttaatggaggaactgactccgaagccaatagatacagaaatggaggacgtgcaagaa
gagcatggtctgtttggaagagcgcaccctagcgagccaaagcttcaaaaccaaaacggc
aggaagggcctttcttcctccattctgcttttcactccctcagataccgctgagcctgat
gctcctgacagggccgctgcagatgtgtgttcacctgttttgcccatgttaggtactact
ccagcttttggctcccaaccgtactgtgaggagacgtctagagagggtgctgggcaggcc
tgctctccaccccaattttctcaggtgaaaggcccagtcagtcctgaaggtgatagtaag
caccgcgacagttcagcccgtgtgtcaggcaggcaaggacaacccacctgggactgcaac
tccggcccctcggccacacctccgccagtggagtcactcagcgtcagagaagatccactc
tgtggagacccatgccaggagcgacatacacgtttggtggaacagacggaaatggcagat
ccttctgcttgtgatgactctctaaactcccacgacctacaattggtttcaaagttaaag
agtgcttctggttcctgctctgtggatgtgagtgccatgtggtgggaaagagctggtgtc
aaagaatcatgcatcataactgcctgtgagtacgtcgtggctctgtggaaacctctggat
gctaagcggtggaaaaaaaattatacgtggcacttcaaagagattccagttttacaaata
gttcctgtgcctgatgtctgtaacctagtgtgtgtagctttaggaaatttggaaatcaga
gaactcagggcattactttgtccctgtgatgataaaagtgacaagcaagtactactgaaa
tctggaaacatagaagctgtggctggcctgaccaagaggagactagtcagtagcagtggc
accctggacgaccagcaagtggaagtcatgacatttgcagaagatggaggaatcaatgag
aagcactttttgatgcctcctgaagaggccgtaacaactttcgccgaagtccaagggatg
gaggaaaccctgcttggcacaacggggatgagcagtattgtgatttggaatttaaaaact
ggtcaactcctgaaaaaagtgcacattgatgaatcttaccatggttcagtctgtcacaaa
gcctattcggacatggggctcctgttccttgttctgaatcatccttgcgccaaagatggt
cagtcactcgaaaagcctgtgttccagctgattgcgattaaccccaagacgtcgctgaat
gtgggagtaatgctgtactgtctccctcatgggcaggctggcaggttcctggaaggtgac
gtgaaagaccactttgcagcagcagtcctgacttcgggaaccattgccatctgggacctg
cttctcggtcactgcactgcccttctgcctcctgtctctgaccaaaattggtcttttgtg
aaatggtcaagcacagattctcatttgttagctggacaaaaggatggaaatatatttgtg
taccgctgcacgtga
DBGET
integrated database retrieval system
