Ochotona curzoniae (black-lipped pika): 121155142
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Entry
121155142 CDS
T11174
Symbol
SHANK1
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 1 isoform X1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz04724
Glutamatergic synapse
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09150 Organismal Systems
09156 Nervous system
04724 Glutamatergic synapse
121155142 (SHANK1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
SAM_1
SH3_2
Ank_5
SAM_2
PDZ
PDZ_6
SH3_1
SH3_9
FERM_f0
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
121155142
NCBI-ProteinID:
XP_040834267
LinkDB
All DBs
Position
Unknown
AA seq
2179 aa
AA seq
DB search
MTHSPATSEDEEGHSASECPDGGSESHSSPDGPGRGPRGSQARGSSGTPASLASARGLQG
RSMSVPNDAHFSMMVFRIGIPDLHQTKCLRFNPDATIWTAKQQVLCALSESLQDVLNYGL
FQPATSGRDANFLEEERLLREYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKTG
LKKFLEYVQLGTSDKVARLLDKGLDPNYHDSDSGETPLTLAAQTEGSVEVIRTLCLGGAH
IDFRARDGMTALHKAACARHCLALTALLDLGGSPNYKDRRGLTPLFHTAMVGGDPRCCEL
LLYNRAQLGVADENGWQEIHQACQHGHSQHLEHLLFYGAEPGAQNASGNTALHICALYNK
ETCARILLYRGANKDVKNNSGQTPFQVAVIAGNFELGELIRNHREQDVVPFQESPKYAAR
RRGPPGAGLTVPPALLRANSDTSMALPDWMVFSAPGTSSSAAPGPAPGPQGPAQPSAPST
KVSSGTLRSASSPRGARARSPSRGRHPEEAKRQPRGRPSSSGTPREGPAGGTGGSGGPGG
SLGSRGRRRKLYSAVPGRSFMAVKSYQAQGEGEISLSKGEKIKVLSIGEGGFWEGQVKGR
VGWFPSDCLEEVANRSQEGKQESRSDKAKRLFRHYTVGSYDSFDAPSLMNGIGLGSDYII
KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMG
DFLIEVNGQNVVKVGHRQVVNMIRQGGNTLTVKVVMVTRHPDMDETVHKKAPQQAKRLPP
PAISLRSKSMTSELEEMEYEQQPPPVPSMEKKRTVYQMALNKLDEILAAAQQTISASESP
GPGGLASLGKHRPKGFFATESSFDPHHRSQPSYERPSFLPPGPGLMLRQKSIGAAEDDRP
YLAPPAMKFSRSLSVPGSEDIPPPPTTSPPEPPYSTPPAPSSSGRLTPSPRGGPFNPSSG
HTPLPASSPASFDGPSPPDVRGAAGGRDKSLYHAGPLPPAHHHPPHHHHHHAPPPPPHHH
HAHPPHPPEMETGGAPDDPPPRLALGPQPSLRGWRGGGPSPSPGAPSPSHHGGGGAGVGG
GGGGGSPQAPALRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGGLPGAGA
PPSSPASPQPTPSAGAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPEVAG
GGGGGGGSAPSPAPVLSPALPSPSPVPTPASPSGPATLDFTSQFGAALVGAARREGGWQN
EARRRSTLFLSTDAGDDEGGGDGMGAGAPPGPRLRHSKSIDEGMFSAEPYLRLESASAGG
GAGYTGYGAAGRAYAGSAGGGSSAFTSFLPPRPLVHPLTGKALDPASPLGLALAARERAL
KESSEGGGAPQPPARPPSPRYDAPPPTPHHHSPHAHHEPVLRLWGASPADPARRELGYRA
GLGGVEKALPASPPAARRSLLHRLPPAGPGVGPLLLQLGPEPPTPHPAVSKAWRSGAPEE
PERLPLHVRFLENCQPRAPTASGRGPPATEDGPGAPPPPPSPRRSVPPSPTSPRGGEENG
LPLLVLPPPAPSVDVEDGEFLFVEPLPPPLEFSNSFEKPESPLTPGPPLPLPEPPAPASP
LPPAPSPAGAAPAPPALDSTASSLTSYDSEVATLTQGAPAAPGEPPPPGPPVPAAPAAPA
PQPGPDPPPGTDSGIEEVDSRSSSDHPLETISSASTLSSLSAEGGGGSTGGGGSGVASGP
ELLDTYVAYLDGQAFGGGSTPGPPYPPQLMTPSKLRGRALGAGGGLRPGPTGGLRDPVTP
TSPTVSVTGAGTEGLLALTGCSGPSAAGVVGSPVAVESEVPPVALPAASSLPRKLLPWEE
GPGPPPPPLPGPLAQPQASALATVKASIISELSSKLQQFGGASAAGGALPWSRGGGGGSG
DGHHTGASYVPERTSSLQRQRLSEDSQSSLLSKPVSGLFQNWSKPPLPALPTGTAISPSA
AAAPGATSPSASSSSGSTRHLQGVEFEMRAPLLRRAPSPSLLPASEHKVSPAPRPSSLPI
LPSGPLYPGLFDIRGSPTGGAGGSADPFAPVFVPPHPGISGGLGGALSGASRSLSPTRLL
SLPPDKPFGAKPLGFWTKFDVADWLEWLGLAEHRARFLDHEIDGSHLPALTKDDYVDLGV
TRVGHRMNIDRALKFFLER
NT seq
6540 nt
NT seq
+upstream
nt +downstream
nt
atgacccacagccccgccacaagcgaggacgaggaaggccacagcgccagcgagtgtccc
gacgggggctccgaatcacacagctccccagacgggccagggcgaggcccccgggggtcc
caggcccggggcagcagcggcacacctgctagcttggcctcggctcggggccttcaaggt
cgctccatgtctgtccccaacgacgcccacttcagcatgatggtgttcaggatcggcatt
ccggacctgcaccagacgaaatgcctgcgcttcaacccggacgctaccatctggacagcc
aagcagcaggtgctctgtgcgctgagcgagagcctccaggacgtgctcaactatggcctc
ttccagccggccacttcggggcgcgacgccaacttcctggaggaggagaggctgctgcga
gagtaccctcagtcctttgagaagggggtgccctacctggagtttcggtacaagactcga
gtgtacaagcagaccaacctagatgagaagcagctggccaagttgcacaccaagacgggg
ttgaagaagttcctagaatatgtgcagcttgggacatccgacaaggtggcgaggctgttg
gacaaggggctggaccccaattaccacgactcggactcaggagagactcccttgacactg
gcggcccagactgagggttccgtggaggtgattcgaaccctgtgcctgggcggggcccac
atcgacttccgggcccgggatggcatgacagcgctgcacaaggccgcgtgtgcccgccac
tgcctcgcactcacggcacttctggacctcgggggctctcccaactacaaggaccgccgg
ggactgactcctctgttccacacggctatggttgggggggacccccgctgctgcgagctg
ctgctatacaacagggcccagctgggggtggccgacgagaatggctggcaggagatccac
caggcctgccagcacggccactcccagcacctggaacacctgctcttctatggggcggag
cctggagcccagaacgcctccgggaacacggccctgcacatatgtgccctctacaacaag
gagacctgcgcccggatcttgctctacagaggggccaacaaggacgtgaagaacaatagc
gggcagactcccttccaggtggccgtcattgctgggaattttgagttgggggagttgatc
cgaaatcaccgagaacaggacgtggtacccttccaggagtcccccaagtacgcagcgcgg
cggcggggccccccaggcgcagggctgacagtgcccccggccctgctacgggccaacagt
gacaccagcatggcactgcccgactggatggtgttctcagccccggggacctcgtcttcg
gcggcccccggcccagctccgggaccccagggcccagcgcagccttcagcccccagcacc
aaagtcagcagcgggaccctccggagcgccagcagccctcgcggtgcccgtgcccgctcc
ccatcccgaggaagacaccccgaggaagccaagaggcagccccgggggcggcccagctcc
agcgggaccccccgggaaggcccggctgggggcaccggcggctccgggggtcccgggggc
tccctgggcagccgtggcaggcggcggaagctgtactcggccgtgcccggacgctccttc
atggctgtgaagtcgtaccaggcccaaggcgagggagagatctcactgagcaaaggcgag
aagatcaaagtgctcagcatcggagaaggaggcttctgggaggggcaggtcaaaggtcgc
gtcggctggttcccctcggactgcctggaggaagtggccaaccgctcacaggagggcaag
caagaaagccgcagcgacaaggccaagaggctgttccggcactacaccgtgggctcctac
gacagcttcgacgcccccagcctgatgaatgggattggcctagggagcgattacatcatc
aaggagaagactgtcctgctgcagaagaaggacagcgagggcttcggcttcgtgctccgg
ggggccaaggcgcagacccccatcgaggagttcacacccaccccggccttcccggcgctg
cagtacctcgagtcggtggacgagggtggcgtggcatggcgagcagggctgcggatggga
gatttcctcatcgaggtgaacgggcagaacgtggtgaaggtcggccaccgccaggtggtg
aacatgatccgccaggggggcaacacgctgacagtcaaggtggtgatggtcaccaggcac
ccggacatggatgagaccgtgcacaagaaagcaccccagcaggccaagcggctcccgccc
ccagccatctccctgcgttccaagtccatgacctcagagctggaggagatggaatacgag
cagcagccgccaccggtacccagcatggagaagaagcggaccgtgtatcagatggctctc
aacaaactggatgaaatcctggccgccgctcaacagaccatcagtgccagtgagagccct
gggcctggtggccttgcatccctggggaaacaccggcccaaaggcttctttgccaccgag
tcgagcttcgacccccaccaccgctcccagcccagctacgagcgcccctcattcctccct
cccggacctggacttatgctcaggcagaagtcaattggggctgcagaagacgacagaccc
tacctggcgcccccagccatgaagttcagccgcagcctgtccgtgcccggttccgaggac
attcccccgccgcccaccacgtcgcccccagagcccccttacagcaccccgcccgcaccc
tcctcctcgggccgccttacgccctctccgcggggaggccccttcaaccccagctcgggg
cacacacccctgcccgcctcctccccggcgtccttcgacggaccctcccctccggatgtg
cgcggtgccgccgggggccgagacaagagcctgtaccacgcggggcccctgccgccggcg
caccatcacccgccgcaccaccaccaccaccacgcgccgcccccgcccccgcaccaccac
cacgcgcaccccccgcacccgcccgagatggagacgggcggcgcccccgacgaccccccg
ccccgcctggccctagggccgcagcccagtctgcgcggctggcggggcggcgggcccagc
ccgagcccgggggcgccgtcgccttcgcatcacggcggcggtggcgcgggggtaggcggc
ggcggtggcggcggctcccctcaggcgccggccctgcgctacttccagctgcccccgcgg
gccgccagcgcggccatgtacgtgccggcgcgctcgggccgcggccgcaagggcccgctg
gtgaagcagaccaaagtggagggcgagccccagaagggcggcctcccgggcgccggcgcg
ccgccctcctcgcccgcgtccccgcagccgacgccctcggccggggccgcgccgtccgag
aagaattccatccccattcccaccatcatcatcaaggccccgtccaccagcagcagcggc
cgcagcagccagggcagcagcaccgaggccgagccccccacgcagcccgaggtggcgggc
ggaggaggaggaggtggcggttccgccccgagccccgcgcccgtcctgtcgcccgcgctg
ccgtcgccgtcgcccgtgcccacgcccgcgtcgcccagcggcccggccaccttggacttc
accagccagttcggcgcggccctggtgggcgcggcgcgcagggaaggcggctggcagaac
gaggcgcgccggcgctccacgctcttcctctccaccgacgcgggcgacgacgagggcggc
ggcgacgggatgggcgcgggcgcgccccccgggccccgcttgcgccactccaagtccatc
gacgaaggcatgttctcggccgagccctacctccggctggagtcggcgagcgcggggggc
ggcgcgggctacacgggctacggggccgcgggccgggcctacgcgggcagcgccggcggc
ggcagcagcgccttcaccagcttcctgccgccgcggcccctggtgcacccgctcacgggg
aaggccctggacccggcctcgccgctcgggctggccctggccgcgcgcgagcgggcgctg
aaggagtcctcggagggcggcggcgccccgcagccccccgccagacccccgtcgccccgc
tacgacgccccgccgcccacgccgcaccaccactcgccccacgcccaccacgagcccgtg
ctgcgcctctggggcgcctcaccagccgaccctgctcgccgggagctgggctaccgggca
gggctgggcggcgtggagaaggcgctcccggccagcccgcccgccgcgcgccgctcgctg
ctgcaccgcctgccgcccgccgggcccggggtcgggccgctcctgctgcagctggggccc
gagccgcccaccccgcaccccgccgtgagcaaggcctggcggtccggggcccccgaagag
ccggagcggctgcccctccacgtgcgcttcctggagaattgtcagccgcgcgccccgacg
gcgagcggcaggggaccgccggccaccgaggacgggcccggggcgcccccgccgcctccc
agcccccgccggtcggtgcccccgtcgcccacgtcgccgcggggcggagaggagaacggc
ctgccgctgctcgtcctgccgccccccgcaccctccgtggacgtggaggacggcgagttc
ctcttcgtggagccgctgcccccgcccctggagttctccaacagcttcgagaagcccgag
tcgccgctcacgccggggcccccgctgccactgcccgagccgccggccccagcctcgccc
ctgccccccgcgccgtccccggccggggccgcccccgccccacccgccctggactccacc
gcctcgagcctgacctcctacgacagcgaggtggccacgctgacccagggggcccccgct
gcccccggggagccgcccccgccgggcccgcccgtccccgccgcgcccgccgcgcccgcc
ccgcaacccgggccggaccctccgccgggcaccgactcgggcattgaagaagtggacagc
cgcagcagcagcgaccacccgctggagaccatcagcagcgcgtccaccctcagcagcctg
tccgcggaaggcggcggcggcagcacgggcggcgggggcagcggcgtggccagtgggccc
gagctcttggacacctacgtggcgtacctggacggccaggccttcgggggcggcagcacc
cccggtccgccatacccgccccagctcatgacgccttccaagctgcggggccgggcactg
ggggccggcggaggcctgcggcccggccccacggggggcctccgcgaccctgtcaccccc
accagcccgaccgtgtcggtgacaggggctggaaccgaggggctgctggccctgaccggc
tgctcgggaccctcggcggcgggcgtggtcgggagtccagtggccgtggagtccgaagtg
cccccggtggccttgccggcggcctcctcgctgccccggaagctgctgccttgggaggaa
ggcccgggcccaccgcctccacccctgccgggacccctggcccagcctcaggcctccgcc
ttggccaccgtcaaagccagcatcatcagcgaactcagctccaagctgcagcagttcggg
ggcgcctcagcagccggcggtgctctgccctggtcccggggaggcggcgggggaagcggg
gacggccaccacacgggagccagctacgtccccgagaggacctcctcgctgcagcggcag
agactctccgaagactcccagtcctcactcctgtccaagccagtcagcggcctctttcag
aactggtccaagccacctctgccagcactccccaccggaaccgccatctccccttctgcc
gcagcggctccgggggccacctccccctcggcctcctcttcctcggggtccactcgccac
ctccagggcgtggagtttgagatgcgggccccgctgctccgccgggccccgagcccctca
ctgctgcccgcctcggagcacaaggtcagccccgcgcccaggccctcgtcgctgcccatc
ctgccttccggacccctctacccggggctcttcgacatccgcggctccccgacgggaggc
gcgggaggctcggcagaccccttcgcccctgtcttcgtgccaccgcaccccggaatctcc
ggagggctaggaggagctttgtcaggggcctctcgctccctctcaccgacccgcctgctg
tcgctgccccccgacaagccgtttggcgctaaacctctggggttctggaccaagttcgac
gtggctgactggctggagtggctcggcctagctgagcaccgagcccggttcctggaccat
gagattgacggctctcacctgcccgccttgaccaaggacgactacgtggacctgggcgtg
accagggtgggccaccgcatgaacatcgaccgggctctcaaattcttcctggagaggtga
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