Ochotona curzoniae (black-lipped pika): 121155601
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Entry
121155601 CDS
T11174
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz04151
PI3K-Akt signaling pathway
ocz04510
Focal adhesion
ocz04512
ECM-receptor interaction
ocz04518
Integrin signaling
ocz04974
Protein digestion and absorption
ocz05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
121155601 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121155601 (COL2A1)
04518 Integrin signaling
121155601 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121155601 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
121155601 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
121155601 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocz00536
]
121155601 (COL2A1)
Glycosaminoglycan binding proteins [BR:
ocz00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121155601 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
121155601
NCBI-ProteinID:
XP_040834973
LinkDB
All DBs
Position
Unknown
AA seq
1490 aa
AA seq
DB search
MIRLGAPQTLVLLTLLLAAALRCQGRDAQEGGGCVQEGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDAKDCLSPEIPFGECCPICPTDLAPASGQPGPKGQKGEPGDIKDIIGPKG
PPGPQGPAGEQGPRGDRGDKGEKGPPGPRGRDGEPGTPGNPGPPGPPGRPGPPGPLGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSG
PMGPRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDG
AKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPG
PVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGNPGSPGPAGASGNPGTDGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAG
PQGAPGPAGEEGKRGARGEPGGAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSG
LAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
APGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQG
ARGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEG
APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAG
PPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATG
FPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGSRGDSGPAGRAGDPGLQGPAGPPGEKG
EPGDDGATGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRG
PPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPG
PAGPTGKQGDRGEAGAQGPMGPSGPAGARGIPGPQGPRGDKGESGEPGERGLKGHRGFTG
LQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETG
PAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAGALRQHDADVDA
TLKSLNNQIESLRSPEGSRKNPARTCRDLQLCHPEWKSGDYWIDPNQGCTLDAMKVFCNM
ETGETCVYPNPASVPKKSWWSTKSQKQQHVWFGETINGGFHFSYGDSSLPPNTANVQMTF
LRLLSTEGSQNITYHCKNSVAYLDEASGNLKKALLLQGSNDVEIRAEGNSRFTYTVLQDG
CTKHTGKWGKTVIEYRSQKTSRLPITDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagaccctggtgctactgacgctgctcctcgccgctgcc
cttcggtgtcagggccgagatgcccaggagggcggcggctgtgtgcaggagggacagagg
tataatgataaggatgtgtggaagccggagccgtgccgcatctgtgtctgtgacacgggg
accgtcctgtgtgacgacataatctgtgaagacgccaaggactgcctgagccccgagatc
cccttcggagagtgctgccccatctgccccaccgacctcgcccccgccagtgggcaacca
ggaccaaaggggcagaaaggagaacctggagacatcaaagatatcataggacctaaagga
ccccctggacctcagggacctgcaggtgagcagggacccagaggcgatcgtggcgacaaa
ggtgaaaagggtccccctggaccgcgtggccgagatggagaacctggaacccctgggaac
ccagggccccccggccctcctggtcgccctggcccccctggcccccttggtcttggtgga
aactttgctgcccagatggctggaggttttgatgagaaggctggaggcgcccaaatggga
gtgatgcaaggccccatgggtcccatgggacctcgaggaccacctgggcctgctggtgct
cctggaccccaaggattccaaggcaaccctggcgagcctggagagcctggtgtctctggt
cccatgggtcctcgcggcccccccgggccccctggcaagcctggtgatgatggggaagct
ggaaaacctgggaaatctggtgaaaggggtcctcctggccctcagggtgctcgaggtttc
ccaggaaccccaggccttcccggagtcaaaggtcacagaggctacccagggctggatgga
gccaagggagaagctggcgctcctggcgtaaagggtgagagcggctcccccggtgagaac
ggctctccaggccccatgggtccccggggcctccctggtgagagaggacggactggccct
gctggcgctgcgggtgctcggggcaacgatggccagccaggccctgctggacccccgggt
cctgttggtcctgctggtggtcctggcttccctggtgctcctggggccaagggtgaagct
ggccccactggtgcacgtggccctgaaggcgctcaaggtcctcgtggtgaacctggcaac
cctgggtcccctgggcctgccggagcctctggcaaccctgggacggatggaatccctgga
gccaaagggtctgctggtgctcctggcatcgccggtgctcccggcttcccagggcctcgt
ggtcctcctggccctcaaggtgcaactggtcccctgggccccaaaggccaaacgggtgaa
cctggtattgctggcttcaaaggtgaacaaggccccaagggagaaccgggccctgctggt
ccccagggagcccctggtcccgccggtgaagaaggcaaaagaggcgctcgtggggagcct
ggcggcgctgggcctgtgggccccccaggagaaagaggtgcccctggcaaccgaggtttc
ccaggtcaggacggtctggcagggcccaagggagcccctggagagagagggcctagtggc
ctggctggccccaaaggagccaacggtgaccccggccgccctggagagcctggccttcct
ggagcccggggtctcactggacgccctggtgatgccggtccccaaggcaaagtcggtccc
tcgggagctcctggcgaagacggtcgccctggacccccaggtcctcagggggcacgtgga
cagcctggtgtcatgggcttccctggccccaaaggtgctaatggcgaacctggcaaagct
ggcgagaagggacttgctggtgctcctggcctgagaggtcttcctggcaaagatggcgag
acaggtgctgcaggaccccctggccctgctggccctgcgggagagcgtggcgagcaagga
gctcctgggccttctggattccagggacttcctggcccacctggtcccccaggtgaaggt
ggaaaaccaggagaccagggtgttcccggtgaagctggtgcccccggcctcgtgggtccc
aggggtgaacgcggattcccaggtgaacgtggctctccaggtgcccagggtcttcagggt
gcccgcggcctccccggtacccctggaacagatggccccaaaggagcatctggtcctgct
ggcccccctggggctcaagggcccccaggtctgcaggggatgcctggtgagagaggagca
gctggcatcgctggacccaagggagacagaggtgacgttggtgagaaaggtcccgaggga
gctcccggaaaggatggtggacgaggtttgactggtcccatcggcccaccgggcccagct
ggtgccaatggcgagaagggagaagtcggaccccctggtcctgctggaagtgcaggtgct
cgtggcgcgccgggtgagcgtggagagactgggccccctggacctgctggatttgctgga
ccacccggtgctgacggccagcctggtgccaagggagagcaaggagaagctggacaaaaa
ggtgatgctggcgcccctggccctcagggtccctctggagcaccggggcctcagggtcct
actggagtgaccggtcctaagggggcccgtggagcccaaggccccccgggagccactgga
ttccctggagctgctggccgtgtcggacctcctggctccaatggcaaccctgggcctcct
ggaccccccggtccttctggaaaagatggccccaaaggatctcgaggagacagcggtccc
gcaggccgggccggcgaccctggcctccagggtcccgctggaccccctggcgagaaggga
gagccaggagacgacggtgccaccggtgccgatggccccccaggtccacagggtctggcc
ggtcagaggggcattgtgggtctgcccgggcagcgtggtgagcgaggatttcccggcctg
cctggcccatcgggtgagcccggcaagcagggtgcacctggtgcttctggagatcgtggt
ccccctggccccgtgggtcctcctggcctgactggtcctgcaggtgaacccggaagagag
ggaagccctggtgctgacggtccccctggcagagacggtgcagctggagtcaagggtgac
cgtggtgagactggtgctgtgggtgcccctggagcccctggacctcctggctctcctggc
ccagccggcccaactggcaagcagggagaccgaggggaagctggtgcacaaggtcccatg
ggcccctcaggaccagctggagcccggggcattcccggcccacaaggcccccgaggtgac
aagggagagtctggagagcctggcgagagggggctgaagggacaccgtggcttcactggc
ctacagggcctgcctggccctcccggcccctccggagaccaaggtgcttccggtcccgct
ggcccttccggccccaggggtccccctggccctgtgggtccctcaggcaaagatggtgcc
aatggaatccccggccccattgggcctccaggtccccgtggacgttcaggcgaaaccggc
cccgccggtcctcctggaaatcctggaccccctggccctccaggaccccctggccccggc
atcgacatgtctgcctttgctggcctaggccagagagagaagggccccgaccccctgcag
tacatgcgggcagacgaggcagctggagccctgaggcagcatgatgccgacgtggacgcc
acactcaagtccctcaacaaccaaatcgagagcctccgcagccccgagggctcgcgcaag
aaccccgcacgcacctgccgagacctgcagctctgccatcctgagtggaagagcggtgac
tactggattgaccccaaccaaggctgcaccttggacgccatgaaagttttctgcaacatg
gagactggtgagacctgcgtctaccccaacccggcctctgtgcccaagaagagctggtgg
agcaccaagagccagaagcagcagcacgtgtggtttggggagaccattaacggaggcttc
cacttcagctacggagatagcagcctgcctcccaacactgccaacgtccagatgaccttc
ctgcgcctactgtccactgagggctcgcagaacatcacctaccactgtaagaacagtgtg
gcctacctggacgaagccagtggcaaccttaagaaggccctgctcctgcagggttccaat
gacgtggagatccgggccgagggcaacagcaggttcacctacaccgtgctgcaggatggc
tgcacgaaacacactggtaagtggggcaagaccgtcatcgagtaccgatcccagaagacc
tcgcgcctgcccatcacggacatcgcccccatggacattggagggcctgagcaggagttc
ggcgtggacatcgggcccgtctgcttcttgtaa
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integrated database retrieval system
