Ochotona curzoniae (black-lipped pika): 121157083
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Entry
121157083 CDS
T11174
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03015
mRNA surveillance pathway
ocz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121157083 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
121157083 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocz03019
]
121157083 (PABPC1L)
03041 Spliceosome [BR:
ocz03041
]
121157083 (PABPC1L)
Messenger RNA biogenesis [BR:
ocz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121157083 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
121157083 (PABPC1L)
Spliceosome [BR:
ocz03041
]
Complex C
Other components
Complex C specific factors
121157083 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RBD_DEAH11
RRM_10
SET_assoc
RRM_MARF1
DUF6262
Motif
Other DBs
NCBI-GeneID:
121157083
NCBI-ProteinID:
XP_040837018
LinkDB
All DBs
Position
Unknown
AA seq
617 aa
AA seq
DB search
MHASGPGYPLASLYVGDLHPDVTEAMLYETFSPAGPILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFS
TFGNILSCKVVCNEHGSRGFGFVHFETHEAAQQAIRTMNGMLLNDRKVFVGHFKSRRERE
AELGARALEFTNIYVKNLRVDVDEQGLQDLFSQFGKMLSVKVMRDNSGFSRGFGFVNFEK
HEEAQKAVDHMNGKEVNGRLLYVGRAQKRVERQNELKHKFQQMKQDRLHRYQGVNLYVKN
LDDSIDDEKLRKEFSPYGVITSAKVMTEGDHSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAILTNQYMQRLSSLRALGSPLLGSLQQPSRYFLPAVPQPPAQATY
AGSGTMAPMQPTPRWTAQPPRPSFTCPSAASTVQAPGMSRRPRDHVNSVRQPSTQLPRHV
PQTQRVANVGTQTTGHSGTGCCTPGRSLLPYRCSSGVHYSQSEAAVYIPGQEPLTASMLA
AAPPQEQKQMIGERLYPLVYNVHAQLAGKITGMLLEIDNSELLLMLESPESLHAKIEEAV
AVLQAHQAVEQPKAYAH
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgcacgccagcggcccgggctacccgctcgcctcgctctacgtgggcgacctgcacccg
gacgtgaccgaggccatgctctatgagactttttcgcccgccggccccatcctatccatc
cgcgtgtgccgcgacgtggccacccggcgctcactgggctatgcttacatcaactttcag
cagcctgctgatgctgagcgggccctggataccatgaacttcgaggtgatcaaaggccag
cccattcgcatcatgtggtctcagcgagacccgggactgcgcaagtcgggcgtgggcaat
gtcttcatcaagaacctggaggactccatcgacaacaaggctctgtatgataccttctcc
accttcgggaacatcctctcctgtaaggtggtgtgtaatgagcacggctctcggggcttc
ggttttgtgcactttgagactcacgaggctgcacagcaggccatccgcaccatgaacggg
atgctgctgaatgaccgcaaagtctttgttggccacttcaagtctcggcgggagcgggag
gcagagctgggggcgcgggccctggagttcaccaacatctacgtgaagaacctgcgggtg
gacgtggatgagcaaggcctgcaggacctcttctcccagttcggaaagatgctgagtgtg
aaggtgatgcgggacaacagtggcttctcccggggcttcggcttcgtcaacttcgagaaa
catgaggaagcccagaaggccgtggaccacatgaatggaaaggaggtgaacggccggctg
ctgtacgtgggccgtgcccagaagcgggtggagcggcagaatgaactgaagcacaagttc
cagcagatgaagcaggaccggctgcaccgttaccagggcgtgaacctgtatgtgaagaac
ctggatgactctattgatgatgagaaattgaggaaagagttctctccctatggggtgatc
accagcgcaaaggtgatgacagagggtgaccacagcaaggggtttggctttgtgtgtttt
tcctctccagaggaggcgaccaaggctgtgaccgagatgaatgggcgcatcgtgggcacc
aagccgctgtacgtggcgctggcccagcgcaaagaggagcggaaagccatcctaacgaac
cagtacatgcagcgcctctccagcctgcgagccctggggagccccctcctgggctctttg
cagcagccctcccgctacttcctgcccgctgtgccgcagcctcctgcacaggctacatat
gctggctctggcaccatggcccccatgcagcccactcccaggtggacagcccagccaccg
cgaccttcattcacctgcccttcagctgcttccactgtccaggcaccgggcatgtcgcgg
cgcccccgggaccatgtcaacagtgtcaggcagccctccacccagctgccacggcatgtg
cctcagacccaacgagtggccaacgttgggactcagaccacaggacacagtggcacagga
tgctgcacgccaggccggtctctcctgccctacagatgttcctcaggagtccactactcc
cagtctgaggctgctgtatatatccctggccaggagcctctgactgcgtccatgctggct
gcggcgcccccacaagagcaaaaacagatgatcggggagcgtctctaccctcttgtttac
aacgtccacgcacagctggctggcaagatcacgggcatgctgctggagattgacaactcg
gagctgctgctcatgctggagtctccagagtccctccatgccaagatagaagaggcggtg
gcagtgctgcaggcccaccaggctgtggagcagcccaaggcgtacgcgcactga
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