Ochotona curzoniae (black-lipped pika): 121157474
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Entry
121157474 CDS
T11174
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03008
Ribosome biogenesis in eukaryotes
ocz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121157474 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
121157474 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocz03021
]
121157474 (XRN2)
03019 Messenger RNA biogenesis [BR:
ocz03019
]
121157474 (XRN2)
03009 Ribosome biogenesis [BR:
ocz03009
]
121157474 (XRN2)
03016 Transfer RNA biogenesis [BR:
ocz03016
]
121157474 (XRN2)
Transcription machinery [BR:
ocz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121157474 (XRN2)
Messenger RNA biogenesis [BR:
ocz03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
121157474 (XRN2)
Ribosome biogenesis [BR:
ocz03009
]
Eukaryotic type
Pre-60S particles
RNases
121157474 (XRN2)
Transfer RNA biogenesis [BR:
ocz03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
121157474 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
121157474
NCBI-ProteinID:
XP_040837705
LinkDB
All DBs
Position
Unknown
AA seq
950 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAIEKQRVREEILAKGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNNPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGE
FIFLRLNVLREYLERELTMASLPFTFDIERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE
KRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMRMQNNSSPSVSPNTSF
TSDGSPSPVGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSEFEKGTKPFKPLEQLMG
VFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEENRRNSLGGDVLFVGKHHPLHDFILELYQTGSTEPVDVPPELCHGIQG
KFSLDEEAILPDQVVCSPIPLLRDLTQNAAISISFKDPQFAEDYIFKAVMLPGARKPAAV
LKPSDWEKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTLGHVMPRGSGAGVYSNAAPPPAT
YQGNLYRPLLRGQAQIPKLMSNMRPQESWRGPPPLFQQQRFDRGVGAEPLLPWNRMIQNQ
NAAFPPNQYQMLAGPGAYPPRRDDRGGRQGYPREGRKYPLPPPSGRYSWN
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggccttcttccgctggctcagccgcaagtacccgtctatcattgtcaac
tgcgtggaagagaagccaaaagaatgcaatggtgtaaagattccagttgatgccagtaaa
cctaatccaaatgatgtggagtttgataatctgtatttggatatgaatgggatcatccac
ccctgtactcatccagaggacaaaccagcaccgaaaaacgaagatgaaatgatggttgca
atttttgagtacattgacaggcttttcaatattgtaagaccaagaaggcttctctacatg
gctatagatggagtggcaccacgtgctaaaatgaaccagcagcgttcaaggaggtttaga
gcatcgaaagaaggaatggaggcagctatcgagaagcagcgagtccgggaggaaatactg
gcgaaaggtggctatcttcctccagaagagatcaaagaaaggtttgacagcaactgtatt
acaccaggaactgagttcatggacaatcttgctaaatgccttcgctattacatagcagat
cgcttaaataataaccctgggtggaagaatttgacagttattttgtcggatgctagtgct
cctggtgaaggagaacataaaatcatggattacattagaagacaaagagcccagcccaac
catgacccaaatactcaccattgtttatgtggagctgatgctgatctcattatgcttggc
cttgctacacatgaacccaactttaccattattagagaagaattcaagccaaacaaaccc
aaaccgtgtggtctttgtaatcaatttggacatgaggtcaaggattgtgaaggtttgcca
agggaaaaaaaaggaaagcatgatgaacttgctgatagtcttccttgcgcagaaggggag
tttatcttcctgcggcttaatgtccttcgtgagtatttggaacgggaacttaccatggcc
agcctaccgttcacatttgatattgagaggagtatcgatgactgggtcttcatgtgcttc
tttgtgggaaatgactttcttcctcacttgccatcattagagattagggaaggtgcgatt
gatcgtttggttaacatatataagaatgtggtacacaaaactgggggttaccttacagaa
agtggttatgtcaatctgcaaagagtacagatgatcatgttagcagttggtgaagttgag
gatagcatttttaaaaagagaaaggatgatgaggacagttttagaagacgacagaaagaa
aaaaggaagaggatgaagagagatcaaccagctttcactcctagtggaatattaacccct
catgcattgggttcaagaaattcacccggatctcaagtagccagtaatccgaggcaagca
gcctatgaaatgaggatgcagaataactctagcccttcagtgtctcctaatacgagtttc
acgtctgatggctccccatctccagtaggaggaattaagcggaaagcagaagacagtgac
agtgaacctgagcctgaggataacgtcaggttatgggaagctggttggaaacagcgatat
tataagaacaaatttgatgttgatgcagcagatgagaaattccgccgtaaagttgtgcag
tcttacgttgaaggtctttgctgggttcttcggtattactaccagggctgtgcttcctgg
aagtggtattatccattccattatgcaccatttgcttcagacttcgaaggaattgcagac
atgccttctgagtttgagaagggtacaaaaccgtttaaaccactggagcaacttatggga
gttttcccagcagcaagtggtaactttctacctccatcgtggcgaaagctcatgagtgac
cctgattctagtataattgacttttatcccgaagactttgctattgatttgaatggaaag
aaatatgcatggcaaggtgttgctctgttgccattcgtggatgaacgcaggctgcgagcg
gccctggaagaggtgtacccagacctgactccagaagagaacagaagaaacagtcttgga
ggtgatgtcttgtttgtggggaagcatcatccacttcatgactttattttagagctctat
cagacgggttccacagagccagtggatgtaccacctgaactgtgtcatgggattcaaggg
aagttttctttggatgaagaagccattcttccagatcaagtggtgtgttctcctattcct
ctgctacgagacctgacacagaatgctgcaatcagtattagtttcaaagacccacagttt
gcagaagattacatttttaaagctgtaatgcttccgggagcaagaaagccggctgcagta
ctgaaacccagtgactgggaaaaatccagcaatggacgacagtggaagccgcagcttggc
tttaaccgggaccggcggcctgtgcacctggaccaggcagccttcaggactttgggccat
gtcatgccaagaggttcgggagctggcgtttacagcaatgctgcaccaccacctgccact
taccagggaaacttgtacaggccactgttgagaggacaagcccagattccaaaacttatg
tcaaatatgaggccgcaggaatcctggcgaggcccgccgccacttttccagcagcaaagg
ttcgacagaggagttggggctgagcctctcctgccgtggaaccggatgatccaaaaccaa
aacgcagccttcccaccaaaccagtaccagatgctagctgggcctggcgcatacccaccc
agacgagatgatcgtggagggagacagggatatcccagagaaggaaggaaataccctttg
ccaccaccctcaggaagatacagttggaattaa
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