KEGG   Ochotona curzoniae (black-lipped pika): 121157665
Entry
121157665         CDS       T11174                                 
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
ocz  Ochotona curzoniae (black-lipped pika)
Pathway
ocz03420  Nucleotide excision repair
ocz04120  Ubiquitin mediated proteolysis
ocz05161  Hepatitis B
ocz05170  Human immunodeficiency virus 1 infection
ocz05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:ocz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    121157665 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    121157665 (DDB1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    121157665 (DDB1)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    121157665 (DDB1)
   05161 Hepatitis B
    121157665 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ocz04121]
    121157665 (DDB1)
   03400 DNA repair and recombination proteins [BR:ocz03400]
    121157665 (DDB1)
Ubiquitin system [BR:ocz04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     121157665 (DDB1)
DNA repair and recombination proteins [BR:ocz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      121157665 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      121157665 (DDB1)
SSDB
Motif
Pfam: CPSF_A Beta-prop_RSE1_1st Beta-prop_RSE1_2nd Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 121157665
NCBI-ProteinID: XP_040837946
LinkDB
Position
Unknown
AA seq 1140 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGENKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRD
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQGKNISVASCNSNQVVVAVGRSLYYLQIHPKELLQISHTEMEHEVAC
LDITPLGDSNGLSPLCAIGLWTDISARIMKLPTFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDATGGTTALRPSASTQALSSSISSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtggtaactgcgcagaagcccaccgccgtgaacggctgtgtgacc
ggacacttcacttcagcggaagacttgaacctgctgattgccaaaaacacgaggttagag
atctatgtggtcaccgcagaggggcttcggcccgtcaaggaggtgggcatgtatgggaag
attgccgtcatggagcttttcaggcctaagggggagaacaaggacctgctgtttatcctg
acagcgaagtacaacgcctgcatcctggagtataagcagagtggtgagagcattgatatc
atcacgcgggcccacggcaatgtccaggaccgcataggccgcccttcagagactggcatt
attggcatcattgaccccgaatgccggatgatcggcttgagactctacgatggcctcttc
aaggtcattccactggatcgggacaataaagagctgaaggccttcaacattcgcctggag
gagttgcatgttattgacgtcaagttcctatatggttgccaagcacctaccatttgcttt
gtctaccaggaccctcaagggcggcacgtcaaaacctatgaggtgtcccttcgggagaag
gaattcaacaagggcccttggaaacaggaaaatgtagaagctgaagcctccatggtgatt
gcagtcccagagccctttggaggagccatcatcattggacaggaatccatcacttaccac
aatggtgacaagtacctggcgattgcgcctcctatcatcaagcaaagcacaatcgtgtgt
cacaaccgagtggaccccaatggttctcgatacctgctgggcgacatggaagggcggctc
ttcatgctgcttttagagaaggaggaacagatggacggcaccgtcaccctcaaggatctc
cgtgtggaactccttggagagacttctattgctgagtgcttgacgtaccttgataatgga
gttgtctttgttgggtctcgcctgggtgactcccagctagtgaagctcaatgttgacagc
aacgaacaaggctcatatgtagtagccatggaaacttttactaatttaggacccattgtg
gatatgtgtgtggtggacctggagaggcagggccagggccagctggtcacttgctctggt
gcttttaaggaaggttccttgcggatcatccggaatgggattggaatccatgaacacgcc
agcattgacttaccaggcatcaaaggcttatggccgctgcggtctgaccccaaccgtgac
actgatgacactctcgtgctctcttttgtgggccagaccagagttctcatgttaaatggg
gaggaagtggaggaaactgaactgatgggttttgtggatgatcagcagactttcttctgt
ggcaatgtggctcatcaacaacttatccagatcacttcggcatctgtgaggttggtctca
caggagcccaaagctctggtgagtgaatggaaggagcctcagggcaagaacatcagtgtg
gcctcctgcaacagcaaccaggtggtggtggctgtcggaaggtccctctactacctgcag
atccaccctaaggagctgctgcagatcagccacacagagatggaacatgaagtggcctgc
ctggatatcaccccgttaggggatagcaatgggctctcccctctctgtgccattggtctc
tggacagacatctctgcccgcatcatgaagctgcccacttttgaattactgcacaaggag
atgctgggtggagagatcatccctcgctctatcctgatgaccacctttgagagtagccac
tacctcctttgtgccttgggagatggggcacttttctacttcgggctcaacattgagaca
ggcttgttgagtgaccgcaagaaggtgaccttgggcacccaacccacagtgttgaggact
ttccgttctctttctaccaccaacgtctttgcttgctctgatcgccccactgtcatctat
agcagcaaccataaattggtgttctccaatgtcaacctaaaggaagtgaactacatgtgt
cccctaaactcagatggctatcctgacagcctggcactggccaacaacagcaccctcacc
attggcaccattgatgagatccagaaacttcatattcgcacagttccactctacgagtct
cccaggaagatctgctatcaggaagtgtctcagtgctttggggtactctccagccgcatt
gaagtccaagacgccactgggggcaccactgccctgaggcccagtgccagcactcaggcc
ttgtctagcagcatcagctccagcaagctgttctccagcagcacggcaccacatgagacc
tccttcggagaagaggtggaggtgcacaacctcctgattattgaccagcatacctttgaa
gtgcttcatgcccaccagtttctgcagaatgagtatgccctaagcctggtctcctgcaag
ttgggcaaagaccccaacacgtatttcatcgtgggcacagccatggtataccctgaagag
gcagagcctaagcaaggacgcattgtggtcttccagtattcggatgggaaactacagact
gtggctgagaaggaagtgaaaggagctgtgtactccatggtggaatttaacggcaaattg
ttggccagcatcaacagcacggtgcggctgtatgaatggacgaccgagaaggagctgcgc
actgagtgcaaccactacaacaacatcatggctctgtacctgaagaccaagggcgacttc
atcctggttggcgacctcatgcgctcagtgctgctgcttgcctacaagcccatggaggga
aactttgaagagattgctcgagactttaatcccaactggatgagtgcggtagaaatcttg
gatgatgacaatttcctgggagctgagaatgcatttaacttgtttgtgtgtcagaaggat
agtgctgccaccactgatgaggagcggcagcaccttcaggaggtcgggctgttccacctg
ggcgagtttgtcaacgtgttctgccacggctctctggtcatgcagaacctgggcgagact
tccactcccacccagggctcagtcctttttggcacagtcaatggcatgattgggctggtg
acctcactgtcagagagctggtacaacctgctactggacatgcagaatcgactgaataaa
gtcatcaagagcgtgggcaagattgaacactccttctggagatcctttcacactgagcgc
aagacagagccagccacaggctttatcgacggtgacctgattgagagtttcttggatatt
agtcgccccaagatgcaggaggttgtggcaaacctacagtacgatgatggcagtggcatg
aagcgagaggctaccgccgatgacctgatcaaggttgtggaggagctaactcggatccat
tag

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