Ochotona curzoniae (black-lipped pika): 121157929
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Entry
121157929 CDS
T11174
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121157929 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocz03021
]
121157929 (SF3B3)
03041 Spliceosome [BR:
ocz03041
]
121157929 (SF3B3)
03036 Chromosome and associated proteins [BR:
ocz03036
]
121157929 (SF3B3)
Transcription machinery [BR:
ocz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
121157929 (SF3B3)
Spliceosome [BR:
ocz03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121157929 (SF3B3)
Complex B
121157929 (SF3B3)
Complex C
U2 SnRNP specific factors
121157929 (SF3B3)
Chromosome and associated proteins [BR:
ocz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
121157929 (SF3B3)
TFTC complex
121157929 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
121157929
NCBI-ProteinID:
XP_040838332
LinkDB
All DBs
Position
Unknown
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
EDWYVLVGVAKDLILNPRSVAGGFVYTYKLINNGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgtacaacttgaccttgcagcgagccactggcattagctttgccattcatggc
aacttctctggaaccaaacaacaggaaattgttgtttctcgtggcaagatcttggagctg
ctgcggccagaccccaacactggcaaagtgcatactcttctcaccgtggaagtgtttggt
gtaatccgctcactcatggccttcaggcttacaggaggcaccaaagactacatagtggtt
ggcagtgactcagggcggattgttatcttggaataccagccttctaagaatatgtttgag
aaaattcaccaagaaacttttggcaagagtgggtgccgccgcatcgtacctggacagttt
ttagctgtggaccccaaggggcgagctgttatgattagtgccatcgaaaagcagaaattg
gtgtacattttgaacagagatgctgcagcccgccttaccatttcatctcccttggaggct
cacaaagcaaacactttagtataccatgtagttggagttgatgtgggatttgaaaatcct
atgtttgcttgtctggaaatggattatgaggaagcagacaatgatccaacaggagaagca
gcagctaatacccagcagacactgactttctatgagctagaccttggtttaaatcatgtg
gtccgaaagtacagtgaacctttggaggaacatggcaacttccttattacagttccagga
gggtctgatggtccaagtggagtactgatttgctctgaaaactatatcacttacaagaac
tttggtgaccaaccggatatccgatgtccaattcccaggagacggaatgacctggatgac
cctgaaagaggaatgatttttgtctgctctgcaacccataagaccaagtcgatgttcttc
ttcttggcccaaacagagcagggcgatatcttcaagatcactttggagacagatgaagat
atggttactgagatccggcttaagtattttgatactgtgcctgttgctgcagccatgtgt
gtgcttaaaacaggctttctttttgtggcatcagaatttggaaaccattatctgtatcaa
attgcacatcttggagatgatgatgaagaacctgaattttcatctgccatgcctctggaa
gaaggagacacattcttttttcagccaagaccactgaaaaaccttgtgctagttgatgag
ttggatagcctttctcccattctgttctgccagatagctgatctggccaatgaagatact
ccacagctgtatgtggcctgtggcaggggaccccgatcatctctaagagtcttaaggcat
ggacttgaggtgtcagaaatggctgtttctgaactacccggtaaccccaatgctgtctgg
actgtgcgtcggcacattgaagatgagtttgatgcttacatcatcgtgtctttcgtgaat
gctacccttgtgctgtccatcggagagactgtggaagaagtgactgactctgggtttctg
ggcaccactccaaccttgtcctgctccttgttaggagatgatgccctggtgcaggtgtat
cctgatggcattcggcacatccgagcagacaagcgagtcaatgagtggaagactcctgga
aagaagacaattgtgaagtgtgcagtgaaccagcgccaagttgtgattgccttgacggga
ggagagctggtctattttgaaatggatccttcaggacagctgaacgagtacacagaacgg
aaagagatgtctgcagatgtggtgtgcatgagtctggctaatgtgcctcctggagagcag
cggtctcgtttcctggctgtgggattggtggacaacactgtccggattatctccctggac
ccctcagactgtttgcagcctctgagtatgcaggctctcccagcccagcctgagtccttg
tgtattgtggaaatggggggcactgagaagcaggatgagctgggtgagaggggctctatt
ggcttcctgtacctgaatattggattacagaacggtgtgttgctgagaactgtcctggac
cctgtcactggagatttgtcggacactcgcactaggtacctgggatcccgccctgtgaag
ctgtttcgtgttcggatgcaaggccaggaagctgtattggccatgtcaagccgttcgtgg
ttgagctattcttaccagtctcgcttccatctgactcctctgtcttatgagactctggag
tttgcatcaggctttgcctctgaacagtgtcctgagggaattgtggccatctctaccaat
actctgaggattttggcattggagaagcttggtgctgtcttcaatcaagtagcctttcca
ctgcagtacacacccaggaaattcgtcatccatcctgagagtaacaaccttatcatcatt
gagacagaccacaatgcctacactgaggccaccaaggctcagaggaagcaacagatggcc
gaggaaatggtggaagcagcaggggaggatgaacgagaattggctgcagagatggcagca
gccttcctcaatgaaaacctgccggaatccatttttggagctccgaaagctggcaatggg
cagtgggcatctgtgatccgggtgatgaatcctattcaggggaatacccttgaccttgtc
caactggaacagaatgaggcagccttcagtgtggctgtgtgcagattctcaaacactggt
gaagactggtatgtgctggtgggtgtggccaaggacctgatcctgaatccccgctctgtg
gcgggaggttttgtctatacttacaagcttattaacaatggggaaaagttggaattcttg
cataagactccagtggaagaagtccctgctgccattgccccgttccagggaagagtgttg
attggtgtggggaagcttttgcgtgtctatgacctggggaagaagaaattactccgaaag
tgtgagaataagcatattgccaactatatatctgggattcagactattgggcacagagtc
attgtgtctgatgtccaagaaagtttcatctgggtgcgctacaaacgtaatgagaaccag
ctcatcatcttcgctgatgacacctatccccgatgggtcaccactgctagcctcctggac
tatgacactgtggctggggcagacaagtttggcaacatttgtgtggtgagactcccacct
aacactaatgatgaagtggatgaggatcccacgggaaacaaggccctttgggaccggggc
ctgctcaatggggcctcacagaaggcagaggtgatcatgaactaccatgttggggagaca
gtgctatcattacagaagaccacactgattcctggaggctcagaatctcttgtctatacc
accttatctggagggattggcatcctggttccattcacatcccatgaggatcatgacttc
ttccagcatgtagaaatgcacctacggtctgagcacccccctctctgtggacgggaccac
ctcagctttcgttcctattacttccctgtaaagaatgtgattgatggagacctctgtgag
cagttcaattccatggaacccaacaagcaaaaaaatgtttctgaggagcttgaccgaact
ccacctgaagtgtccaagaagcttgaggatatccggacccgttatgccttctga
DBGET
integrated database retrieval system
