Ochotona curzoniae (black-lipped pika): 121157989
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Entry
121157989 CDS
T11174
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121157989 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocz03019
]
121157989 (EDC4)
Messenger RNA biogenesis [BR:
ocz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121157989 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
121157989 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
Beta-prop_HPS5
WD40_Prp19
WDR55
Motif
Other DBs
NCBI-GeneID:
121157989
NCBI-ProteinID:
XP_040838449
LinkDB
All DBs
Position
Unknown
AA seq
1404 aa
AA seq
DB search
MASCASIDIEDATQHLRDILKLDRPAAGPSPENQRPSSTYNGDLNGLLVPDPLCSGDGTA
ASKSGLRTLPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLAFAHLNSPQLACLDEAGNLFVWRLALVNGKIQEEILIHIRQPEGTPLNHFRRIIWCPF
IPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSSYSTWPVDVGHIKQGYIVVKGHSTCL
SEGALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEENDSLGADGAHGAGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVIAPLPTHTP
HEEFAFGESRSELGSEGLGSASHGSQPDLRRIVELPAPADFLSLSSETKPKLMTPDAFMT
PTASLQQIAASPGSSNSSSSSSTSSSSSSSSSLTAVSAMSGTSAMDPSLARPPEELTLSP
KLQLDGSLTVSGSNSLQASPRSLLPGLLQGPADKLTPKGPGQVPTAASALSLELQEVEPL
GLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSAPEALEPDSMASAASALH
LLSPRPRPGPELGPQLGLDGGPGDGDRHSTPSLLEAALSQEVVTADSQVWPTAPDITRET
CSTLAESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDTSAEQSDHDDEVASLASASGGFGT
KVPPPRLPVKDWKTKGSPRTSPKLKRKNKKDDGNLAVGPRLTEHQVVEPPEDWPALIWQQ
QRELAELRHSQEELLQRLCAQLEGLQNTVTGLVERALETRHEQEQRWLERALAEGQQRGG
QLQEQLTQQLSQALSTAIAGRLERGLRDEIKKTVPPCVSRTLEPVAGQLNNSVATKLTAV
EGSMKENVSKLFKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQI
NDSFRLGTQEYLQQLENHMKSRKAREQEAREPVLAQLRGLVGTLQSTTEQMAGTVSTTVR
ADLQHELHVAVGSLQESILPQLQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPSA
HLDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLSQPV
LLSLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMTQVRQKLFQFLQAEP
HNSLGKVARRLSLMLHGLVTPSLP
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctgagggacatcctc
aagctggaccggcccgctgcgggccccagtccagagaaccagcgaccatccagcacctac
aatggggatctcaatgggcttctggtcccagatcctctctgctcaggtgatggtactgca
gcaagcaagtctggtctccggaccttgccgcccattaacctgcaggagaaacaggtcatc
tgcctgtcaggggatgacagctctacctgcattgggattttggccaaagaggtggagatt
gtggccagcagcgactcaagcatttcgagcaaggcacggggaagcaacaaggtgaaaata
cagcctgtcgccaaatatgactgggagcagaagtactactacggcaacctgatcgctgta
tcgaactcctttttggcctatgccattcgggctgccaacaatggttcagcgatggtgaga
gtgatcagcgtcagcacttcagagcgaactctgctgaaaggcttcacaggcagcgtggct
gacctggccttcgcacacctcaactctccacagctggcatgcctagatgaggcaggcaac
ctgtttgtttggcgtttagctttggtcaatggcaagatccaagaagagatcttgatccat
atccggcagccagagggcacgccactgaaccatttccgcaggatcatctggtgccccttc
atccctgaggagagtgaggactgctgcgaggagagcagcccaaccgtggccctgctgcat
gaagaccgggctgaggtgtgggacctggacatgctccgctccagctacagcacctggcct
gtggatgttggccacatcaagcagggctacattgtggtgaaaggccacagcacgtgcctc
agcgaaggtgccctctcccctgatgggactgtcctggctactgcgagccatgatggctat
gtcaagttctggcagatctacattgaagggcaggatgagccaaggtgtctgcatgagtgg
aagccacatgatgggcggcctctctcctgcctgctgttctgtgacaaccataagaagcag
gatcctgaggtccctttttggaggttcctcattactggagctgaccagaatcgggaactg
aagatgtggtgcacagtgtcctggacctgcctgcagactatccgcttctccccagatatc
ttcagctcagtgagtgttcccccaagcctcaaggtttgtttggacctttcagcagaatac
ctgattctcagcgatgtgcaacggaaggtcctctacgtgatggagctgctacagaaccag
gaggagggccgcgcctgcttcagctccatctccgagttcctcctcacccatcccgtgctg
agctttgggatccaggttgtgagccgctgccggttgcgacacactgaggtgctgcctgcc
gaggaggagaatgacagtctgggggctgatggtgcccacggagctggtgccatggagtct
gcagccggtgtactcatcaagctcttctgtgtgcatactaaggctctacaagatgtgcag
atccgcttccagccacagctgaaccctgatgtgatagccccgctccccacacacactccc
catgaggagtttgcatttggagaatctagatctgaattaggctctgagggcctggggtca
gcctctcatggctcccagcctgacctccgacgcattgtggagctgcctgcacctgctgac
ttcctcagtctgagcagtgagaccaagcccaagctgatgacacctgacgccttcatgaca
cccactgcctccctgcagcagattgctgcatcccctggcagtagcaatagcagcagcagc
agcagcactagcagcagtagcagcagcagcagctctctcacagccgtgtctgccatgagt
ggcacctcagctatggacccctccttggccaggccacctgaggagctgaccttgagcccc
aagctgcagctggatggcagcctgacagtgagtggcagcaacagtctgcaggcaagccca
cgcagcctcctgcctggccttctccaaggcccagctgacaaactgactcccaaaggacct
gggcaggtacctactgctgcctctgcactgtccctggagctgcaggaagtagaacctctg
ggacttccccaggcttctcccagccgcacccgctcccctgatgttatctcctcggcttcc
actgccttgtcccaggacattcctgagattgcgtccgaggccctgtcccgtggctttggc
tcctctgcccctgaagcccttgagccagacagtatggcctcagctgcctcagcactacac
ctgctctctccacggccccgtccagggcccgagcttggcccccagcttggcctcgatgga
ggcccaggggatggggatcggcacagtactccttccctgctggaggcagccttgagccag
gaagttgtgactgctgacagtcaggtttggcctacagcacctgatattactcgtgagacc
tgtagcaccctggcagagagccccaggaatggcctccaggaaaagcacaagagcctggcc
ttccaccgaccaccttaccacctgctacagcaacatgatagccaggacaccagtgctgag
caaagtgatcacgatgatgaggtggccagcctggcttctgcctcaggaggctttgggacc
aaagttccccctccacggctccccgtcaaggactggaaaaccaaggggtcccctcggacc
tcacctaagctcaagcggaaaaacaagaaggatgatgggaatttagctgtggggccgcgg
cttacggaacaccaggtggtagagccccctgaggactggccagcactgatttggcaacag
cagagagagctggcagagctgcggcacagccaggaagagctgctgcagcgcctgtgtgcc
cagctcgaaggcctacagaacacggtcacgggtcttgtggaacgagctctggagactcga
catgagcaagaacagcggtggctagagcgggccctggcagaggggcaacagcgtggtggg
cagctgcaggagcagctgacccagcagctgtcccaggcactgtctacagctattgctggg
cggttggagcgtggccttcgggatgaaatcaagaagacggttcctccatgtgtctccagg
actctggagcctgtggcaggccaactgaacaattcagtggctaccaaactcacagctgta
gagggcagcatgaaagagaatgtctctaagctgttcaagtccaagaacttgacagatgcc
attgcccgagcagctgcagacacattacagggcccaatgcaagctgcttaccgtgaagcc
ttccagagtgtggtgctgcccgcctttgagaagagctgccaggccatgttccagcagatc
aatgatagcttccggctgggcacacaggaatacttgcagcagctggaaaaccatatgaag
agccggaaagcgcgggaacaggaggctagggagccagtgctggcccagctgcggggcctg
gtgggcacactgcaaagcaccactgagcagatggcaggcaccgtatctaccactgttcgg
gctgacctgcagcatgaactgcatgtggctgtgggcagcctgcaagagtcaattttacca
caattacagcgcatcgtcaagggtgaggtgagcgtagcgctcaaggagcagcaggccgct
gtcacctccagcatcatgcaggccatgcgctcagctgctggtacacctgtcccctctgcg
cacctcgactgccaggcccagcaagcccatatcctgcagctgctgcagcagggccacctc
aatcaggccttccagcaggcgctgacagctgctgacctgaacctggtgctgtatgtgtgt
gaaactgtggacccagcccaggtttttgggcagccgccttgcccactctcccagcctgta
ctcctttcactcattcagcagctggcatcagaccttggcactcgaactgaccttaagctc
agctacctggaagaagctgtaatgcacctggaccacagtgaccccatcactcgagaccac
atgggctccgttatgacccaggtgcgccagaagctattccagttcctgcaggctgagcca
cacaattcacttggcaaagtggctcggcgtctcagcctcatgttgcatggactggtgacc
cccagtcttccttag
DBGET
integrated database retrieval system
