Ochotona curzoniae (black-lipped pika): 121158088
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Entry
121158088 CDS
T11174
Symbol
CHD9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
ocz Ochotona curzoniae (black-lipped pika)
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocz03036
]
121158088 (CHD9)
Chromosome and associated proteins [BR:
ocz03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121158088 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
Motif
Other DBs
NCBI-GeneID:
121158088
NCBI-ProteinID:
XP_040838648
LinkDB
All DBs
Position
Unknown
AA seq
2902 aa
AA seq
DB search
MTDPMMDFFDDTNLFGETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQGPS
AHQKMSDFEQINQFDSMKFHQVNQSFGSSAEHVLSPHSQFNCSPIHPQNQPNGLFPDVAD
GSPMWGHQTATSISNQNGSPFHQQGHSHSMHPNKSFVAHHDFALFQANEQQTQCSSLRSQ
QNRNNLNPGQNSLSQSKTFMDVSVSGSHRVSVNHPPQITNASTSQQSLSMQYSQTSNPSV
HFLKCSTHQEGNFNGPSPNMTSCSVSNSQQFSSHYSFSSNHVSPNSLLQSSAVLAPNHTN
QSLSDFTGSNSFSPHRGIKQESTQHILNSNTSLNSNNFQLLHSSHPQDNYSNSKLSPVHM
NFSDPVDSGTPMGHFNDHVESNGFSSLEENLLHQVESQNEPFTGLDPEDLLQEGLLPQFD
ESTFGQENSSHVLDHDLDRQFASHLVTRPSDVAQTQLPSQARSWHSPFSNHQHLHDRNRL
CLQRQPPSSKKSDGSGTYTKLQNTQVRPMSEKKQRKKVESESKQEKANRIISEAIAKAKE
RGERNIPRVMSPENFPSASAEGKEEKRGRRMKSKPKDKDSKKTKTCSKLKEKTKIGKLII
TLGKKQKRKNESSDEVSDAEQKPQHTSKDQDSQKRRSSRQVKRKKYAEETEGKQSSKEEV
KGSMKIKKNSAPLPGEQPIQLFVENPSEEDAAIVDKILSSRTVKKEISPGVMIDTEEFFV
KYKNYSYLHCEWATEQQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRV
LEVSFCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQASRPDTRRLD
RPPSSIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITF
LHEILLTGIKGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDS
QGRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNL
EHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMM
LRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMM
ELRKCCNHPYLIKGAEEKILGEFRDTYNPTASDFHLQAMIQSAGKLVLIDKLLPKMKAGG
HKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCT
RAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFD
RASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEED
IDQILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDSIS
GRNSLVIDTPRIRKQTRPFSATKAELAELSEAESEGEEKPKLRRPCDRSNGYGRTECFRV
EKNLLVYGWGRWREILSHGRFKRQLNEHDVEIICRALLAYCLVHYRGDEKIKGFIWDLIT
PTEDGQTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAEWLRKYNPEQLLQDEGYKK
HIKHHCNKVLLRVRMLYYLKQEVIGSECQKVFDGVDASDIDVWVPEPDHSEVPAEWWDFD
ADKSLLIGVFKHGYEKYNTIRADPALCFLERVGKPDDKAVAAEQRANDYMDGDVEDPEYK
PAPAIFKDDIEDDVSSPGDLVIADGDGQLMEGDKVYWPTQSALTTRLRRLITAYQRTNKN
RQIQQIQPPFSMPASVMQPLYEEATLNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFD
PDRGQFDWTKFRAMARLHKKTDESLEKYLYAFMSMCRRVCRLPSKEELVDPNIFIQPITE
ERASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPVWWECGPHDRDLLIGAAKHG
VSRTDYHILRDPELSFMTAQRNYSQSKMAHSRTSTPLLQQYQVALSASPLTSLPRLLDAK
GIILEEMKVKSENLKEEPQSSEEESMSSVETRTLIKSEPVSPKNGVLPQATGDQKSGGKG
ETDRRMVAARTEPLTPNPASKKQRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSSCS
HSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEEEVQKRAEGTPHMKAYD
EESVASLSTTQDETQDSFQMNNGTPESAYLLQGGYMLAASYWPKDRVMINRLDSICQTVL
KGKWPSARRSYDANTVASFYTTKLLDSPGAAAEYSEPSVPTPPGASVKEEHQQSAQMSKV
KKHVREKEFTVKIKDEGGLKLTFQKQGLAQKRPFESEDGALGQQQYLTRLRELQSASETS
LVNFPKTVPVAGTAVQSAVGANGVILDNQPIVKKRRGRRKNVEGVDILFLNRNKPPNHVP
SSLATSQMPTGISPALSYGQPQGAPDLESPVPVINLKDGTRLAGDDAPKRKDLEKWLKEH
PGYVEDLGAFIPRMQLHEGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAF
APPLKDLCRFLKENAEYGVAPEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKS
GIAKAAAAAAAATASAVSGSALLPNGLLPGVDLTTLQALQQNLQNLQSLQVTAGLMGMPA
GLSSGGEAKNMAAMFPMLLSGMAGLPNLLGMGGLLTTPTESGTEEKKGNDSKELEGKKER
TESQSPENGGENSVSSSPSASSTAAINTAAAASQLALNPLLLSNILYPGMLLTPGLNLHV
PTLSQSNTFDVQKSKNSDSGSSKSAEIKEEEPRVGDQEDKEGTEASLLNDNSTDEGSEKA
DASSASDSTSSSSEDSESSTED
NT seq
8709 nt
NT seq
+upstream
nt +downstream
nt
atgacggacccaatgatggacttttttgatgataccaatctttttggtgagacattagaa
ggtttgtcagatgacgcatttgtacaaccaggacctgtttctctagttgatgagttgaac
ttgggtgcggaatttgaacctttgcacatagactcactgaatcacgttcagggtccttcg
gcacatcagaagatgagtgattttgaacagataaatcagtttgactcaatgaaatttcat
caagttaatcagtcttttggtagctcagctgagcatgtgttatctccacactctcagttt
aactgttctccaatccacccccaaaaccaacccaatggtttgtttccagatgtagcagat
gggagtccaatgtggggccatcaaacagctactagcatttcaaatcagaatggatctcct
tttcaccaacaaggacattcacactctatgcatccaaataaaagctttgtggcacaccat
gactttgccttatttcaggccaatgaacaacaaacacagtgttcttcactacgttcacaa
caaaacagaaacaaccttaacccagggcaaaattctctcagtcagtctaaaacttttatg
gatgttagtgtttctggttcccacagagtcagtgttaaccacccgccacaaattactaat
gcatctacttcacaacagtctctttcaatgcaatattctcaaacgtccaatccttccgtc
cacttcctcaagtgtagcactcatcaagaagggaattttaatggaccttctccaaatatg
acttcttgttccgtcagtaattcacagcagttttcttcacattattccttttccagtaat
catgtgtcacccaacagtctccttcagtcttctgcagttcttgcacctaatcatacaaat
cagagtttatctgattttactggaagtaattcattttcgcctcataggggaatcaagcaa
gaatctactcagcatattctgaactctaatacatcgttgaattcaaataacttccaattg
ttgcattcgtcacatcctcaggataattacagcaattccaagttatctcctgtacacatg
aacttctccgatcctgtcgactcaggaactccaatgggccatttcaacgatcacgtagaa
agcaatggcttttcatctttagaggagaatttacttcatcaagtggaatctcaaaatgaa
ccattcacaggccttgacccagaggacctgcttcaggaaggtctccttccccagtttgat
gagtcaacgtttgggcaagaaaattcaagtcatgttttagatcacgacctggatcgacag
tttgcttcccatcttgtaacacggccttctgatgtggctcaaactcagttgccaagtcag
gctcggagttggcattcaccattttctaaccatcagcatttacatgacagaaatcgcctg
tgtttacaacgacagcctccatcttccaagaagagtgatggctctgggacatacactaag
ttgcagaatacccaggtgaggcccatgtctgagaagaagcagaggaaaaaggtggaatcg
gaaagcaagcaagaaaaagcgaatcgaataatctccgaggccatagcgaaagccaaggag
cgtggggaacgcaacatcccgcgggtcatgagccctgaaaacttccccagcgcctcagcg
gaggggaaagaggagaagagagggaggaggatgaaatccaagccaaaggacaaagacagc
aagaaaacaaaaacttgctccaagttaaaggagaagacaaaaattggcaaactcattatt
acattgggtaagaaacagaaaagaaagaatgaatcttcagatgaagtatctgatgcagag
cagaaaccacaacatacaagcaaagatcaagactctcaaaaaaggagatcaagtcgacaa
gttaaaagaaaaaaatatgcagaagaaacagaaggaaaacaatcttctaaagaagaggtt
aaaggctctatgaaaataaaaaagaattcagcccctttgcctggggaacagcctatacag
ttatttgtggaaaaccccagtgaggaagatgctgcgattgtagacaaaatactgtcctct
aggactgtaaaaaaggaaatatctcctggagtgatgattgatacagaagaattttttgta
aaatacaagaattactcctaccttcactgtgagtgggccacggaacagcagcttttgaag
gacaaaaggatccagcagaaaatcaaacgattcaaattgagacaagcacaaagagcacat
ttttttgcagatatggaggaagaaccatttaatccagactacgttgaagtagacagagtt
ttggaagtctccttttgtgaagataaagatactggtgagcctgttatttactacttagtg
aagtggtgctcattgccatatgaggatagtacttgggaactgaaggaggatgtagatctt
gcaaaaatagaggagtttgaacaattgcaagcttcaaggcccgacacaagacgtttggat
cgtcctccatctagtatttggaagaaaatagatcaatccagggactacaaaaatggcaat
caactcagggaatatcagctggaaggactcaactggctcctgttcaactggtataatagg
agaaactgcattttagcagatgaaatgggtcttggcaaaaccattcagtcaattacattc
ctccatgagatccttctgactggtataaaaggacctttcctgatcattgctccactttct
accattgcgaattgggagagagaatttcgtacatggactgatattaatgttgtggtttat
catgggagcctcattagcagacaaatgatacagcaatatgagatgtacttcagggactca
caggggcgtatcattcgaggagcttacagattccaggcaattatcaccacttttgaaatg
attcttggaggctgtggagagcttaatgcaattgaatggcgatgtgtgattattgatgaa
gcacatagattaaaaaataaaaactgcaaactcctagaaggtctgaaactcatgaatctg
gaacataaggtgcttttgactggcacacctctccaaaatacagttgaagaactgttcagc
cttcttcattttcttgaacccttaagatttccttctgaatcaacatttatgcaagaattt
ggggatctgaaaacagaagaacaggtgcagaaacttcaggccattctgaaaccgatgatg
ctcagacgattaaaggaagatgtggagaagaagttggcacctaaagaagaaaccatcatt
gaagttgaacttaccaacattcaaaagaagtactaccgagccattctggagaagaatttt
tcattcttatctaaaggagcgggacaaactaatgtacctaacttagtcaacaccatgatg
gagctcagaaagtgctgtaatcacccgtatcttatcaaaggtgctgaggaaaaaatactt
ggagaatttagagacacatataatccaactgcttctgattttcatcttcaagcaatgatc
cagtctgctggtaaattggtccttattgataaattgcttcccaaaatgaaagcaggaggt
cacaaagtactcatcttctctcagatggtccgctgccttgacatcctagaggactatctc
atacataaaagatatttgtatgagcgcattgatggaagagtcagggggaatcttcgacaa
gccgctatagatcgatttagtaaacctgattcagatcgatttgtttttctcctgtgcacc
cgagctggtgggttgggtatcaacttaactgccgctgatacatgtatcatttttgattct
gattggaatcctcaaaatgaccttcaggctcaagcgcgttgccacagaatcggtcaaaac
aaagcagttaaagtctacagactagtaactcgtaattcatatgagagagagatgtttgac
cgagccagtctgaaactgggcctggataaggctgtgctacagagcatgagtggaagagaa
agtaatgttggtggtattcagcagctttccaaaaaggaaatagaagacctgcttcgaaga
ggtgcttatggtgctatcatggaggaagaagatgagggctctaagttctgtgaagaggat
attgaccagatattactacggcgcacaaaaacgattacaattgaatcagaaggacgtggg
tcaacatttgccaaggcaagttttgtggcgtctggaaaccggacagatatttccttagat
gatcccaacttctggcagaagtgggctaaaaaggcagaaatagatatagattccatcagt
ggcagaaacagcttggttattgacaccccaagaatccgaaagcaaacgagacccttcagt
gccacaaaagctgaattggctgagttatcggaggcagaaagtgaaggagaggaaaagccc
aagctcaggagaccctgcgaccggtccaacggctatgggagaaccgagtgctttagggtg
gagaagaacctgctggtctacgggtggggccgatggagggaaattctgtctcatggccgt
tttaaaaggcagctcaatgagcatgatgtagaaataatttgccgcgccctcttagcatat
tgccttgttcattaccgaggagatgagaaaattaagggtttcatatgggaccttattact
ccaactgaagacgggcagacacgagaattacaaaatcatctaggcctgtcagctcctgta
cccaggggtcgaaaaggaaaaaaagtaaagacacaaacaagttcttttgatatacaaaaa
gcagaatggcttcgaaaatataaccctgagcagctacttcaagatgaaggctacaaaaag
catataaaacaccactgtaataaggttttgcttcgtgtgagaatgttgtattatttaaag
caagaagtcattggaagtgagtgtcagaaggtgtttgatggagttgatgcaagtgacatt
gatgtttgggtacctgaaccagatcactcagaagttcctgctgagtggtgggactttgac
gctgataagtccctccttattggtgtttttaaacatggttacgaaaaatacaacactatc
cgagcagacccagcattatgcttcttggaaagagtgggaaaacctgatgacaaagccgtg
gctgctgagcagagagcaaatgattacatggatggggatgtggaagacccagaatacaaa
cctgctccagccatctttaaagatgatatagaggatgatgtgtcctctccaggagatctt
gttatagcagatggagatggtcagctgatggaaggcgacaaggtttactggcctacccag
tcagctctgaccacgcgtttgaggcgtctcatcactgcctatcagcgtactaacaagaac
agacaaatccagcagattcagccacctttctcgatgcctgccagtgtcatgcagcctctg
tatgaagaagccactcttaatcctaaaatggcagccaagatagaaagacagcaaagatgg
acaaggagagaagaagctgacttctatagagttgtctctacgtttggggtagtgtttgat
cctgacagaggccagtttgattggacaaagttcagagctatggctaggctgcacaagaag
actgatgagagtctggagaaatatctgtatgccttcatgtccatgtgccgcagggtttgt
cgccttccttccaaagaagaattggtggatccaaatatttttatccaaccaatcacagag
gaacgcgcttctagaactttgtatcgcattgaacttctgagaaaagtacgagaacaggcc
ctgcgacatccgcagttatttgaacgcttgaagctttgccatccaaacccagacttacca
gtctggtgggaatgtggcccgcatgatagggatctgctgattggcgctgctaagcatggg
gtgagccgaacagactatcatattcttcgtgaccctgaactctcattcatgacggctcaa
aggaactacagtcaaagtaagatggctcattcaaggacttctaccccacttttacagcaa
tatcaagtagcactttctgcttctcctcttacctctctgcctaggctactagatgctaaa
ggtattattctagaggagatgaaagttaaaagtgaaaacctaaaagaagaacctcagtcc
tctgaagaagaatctatgtcttctgtggaaaccaggacactaataaagtctgagcctgta
agtccaaagaatggtgttttaccacaggctactggagatcagaaatctggtggaaaaggc
gaaacagacagacgcatggttgcagccagaacagaacccctaactccaaacccagcttcc
aaaaagcagagagtccacaaaagaggatcagaatctagttccgattctgactccgattct
gagagatcatcctgttcttccagatcatcttcttcctcgtcttcctcctcctcctgttcc
cactctcgatcaggctctagttcttcttcatcctcgtcttgttcttcagcatcgtcttca
tcctcttcctcctcctcttcctcatcatcatcctcttcatcttcatcagaagaaagtgac
agtgaagaagaggaagtccagaagcgagcagaaggtacacctcacatgaaagcctacgac
gaggaaagtgttgcatcactcagcactactcaggatgagacccaggatagcttccagatg
aacaatgggaccccggagtctgcttacctcttacaaggtggatacatgttggcagcctcc
tactggccaaaggaccgcgtgatgatcaatcggttggatagcatttgtcaaacagttctg
aaagggaaatggccgtcagctagaagaagttacgatgctaacacagtggcttccttctat
actacaaaactgctggacagccctggagcagctgcagaatatagtgagcccagtgtccct
actcccccaggtgccagtgtgaaagaagaacaccaacagtcagcacagatgtcaaaggtg
aagaagcatgtacgagaaaaggagtttacagtgaaaatcaaagacgaaggtggtttgaag
ttgacgtttcagaagcaagggcttgctcagaagagaccgtttgaaagtgaagacggtgcc
ctggggcagcagcagtacctcactcgacttcgggagctccagagcgcatccgagaccagc
ctcgtcaattttccaaagactgtgccagttgcaggtactgctgttcaatcagctgttggt
gccaacggagtgatattagacaaccagcctatagtcaaaaaaagaaggggaaggaggaag
aatgtagaaggcgttgacatcctctttcttaacagaaataaaccacctaatcatgttcct
tcgagcttagccacctcacagatgcccacaggcataagcccagcactgtcctatggtcag
ccacaaggagcccctgatctagaaagcccagttccagttattaatcttaaggacgggaca
agacttgcaggagacgatgcaccgaagagaaaggatttggaaaagtggctaaaggaacat
ccaggttacgtggaagatttaggagcatttattccgagaatgcagcttcatgaaggaaga
cccaaacaaaaaaggcatcggtgcagaaaccccaataaactagatgttaatagcctcact
ggagaagaacgtgttcagctgattaacagaagaaatgccagaaaggttggaggtgcgttt
gctccccctttgaaagatttgtgtagattcctaaaagaaaatgcagaatatggagtagct
cctgaatggggagatgttgtgaaacaatcggggtttcttccagagagcatgtatgagcgc
attctcactggtcctgttgtgagagaagaagtgagcaggcgcgggaggcggccgaaaagt
gggattgccaaggctgcagcagcggcggcagctgcgacagcctccgcggtgtcgggcagt
gctttgttacccaatggactgcttccaggtgtggatctcaccactcttcaggccttacaa
caaaacctacagaacctgcagtcattgcaagtcactgcagggctgatgggaatgcctgct
ggcctttcttccggaggagaagccaaaaacatggctgctatgttccctatgctgctgtcg
ggaatggctggtttaccaaacctcttgggcatggggggactcctgacaacacctacagaa
tctgggactgaagagaaaaagggaaatgactctaaggagctagaaggaaagaaagaaagg
acagagagccaaagtccagagaacggtggagaaaactcggtgtcaagttctccttcagct
tcctccacggctgcaataaacacagctgcagctgccagccagttagctcttaacccactg
ttactatctaatatactttacccagggatgcttctcactccaggccttaatcttcatgtt
ccaactttgtcccagtccaatacttttgatgtgcagaaaagcaagaacagtgactcaggc
tcctctaaatccgcagaaataaaggaagaagagcctagagttggagatcaggaagacaag
gaggggactgaagcaagtcttctcaatgacaacagcacagatgagggctcagagaaggcc
gacgcttcctctgcgtccgacagcacgtcgtcatcctccgaggactcagagtctagtact
gaagactga
DBGET
integrated database retrieval system
