Ochotona curzoniae (black-lipped pika): 121158712
Help
Entry
121158712 CDS
T11174
Symbol
PAN2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121158712 (PAN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocz03019
]
121158712 (PAN2)
Enzymes [BR:
ocz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
121158712 (PAN2)
Messenger RNA biogenesis [BR:
ocz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121158712 (PAN2)
mRNA degradation factors
3'-5' decay
Pan complex
121158712 (PAN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
WD40_like
Beta-prop_THOC3
Motif
Other DBs
NCBI-GeneID:
121158712
NCBI-ProteinID:
XP_040839576
LinkDB
All DBs
Position
Unknown
AA seq
1206 aa
AA seq
DB search
MNFEGLDPGLAEYAPAMHSTLDPVLDAHLNPSLLQNVELDAEGVALETLPVQESMHIMEG
VYSELHSVVAEVGVPVSVSHFDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGSDDIR
QIQSLENGILFLTKNNLKYMARGGLIIFDYLLDESEDMHSLLLTDSSTLLIGGLQSHILE
MDLNTVQETQKYAVETPGVTVMRQTNRFFFCGHTSGKISLRDLRTFKVEHEFDAFSGSLS
DFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRL
AIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTVDVSASKQALAFGDSEGCVHLWTDS
PEPSFNPYSRETEFALPCLVDSSLPPLDWSQDLLPLSLIPVPLTTDTLLSDWPAANSAPA
PRRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDSEFDNFSQVTESPIGRE
EEPHLHMVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLE
PVRCLIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILAD
SDEASGKGNLARLIQRWNRFILTQLHQDMQELEVPQAYRGAGGSSFCSSGDSVIGQLFSC
EMENCSLCRCGSETVRSSSTLLFTLSYPEDKSGKNYDFAQVLKRSICLEQNTQAWCDNCE
KYQPTIQTRNIRHLPDILVINCEVNSSKEADFWRVQAEVAFKMAIKKHGGELSKSKEFAL
ADRREVGSPEGVLLCPSIEELKNVWLPFSIRMKMTKNKGLDVCNWTDGDDMQVVEKLGWG
PARAEEEHGVCVYDLMATVVHILDSRPGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFL
IEPIDKHEAVQFDMNWKVPAILYYVKRNLNSRYNLNIKNPIEASVLLAEASLARKQRKTH
TTFIPLMLNEMPQVGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSHMSVARITCVRGQG
PNEGIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGV
KFVGHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDSI
EDARTALQLYRKYLELSKNGTEPESFHKVLKALYEKGRKMDWKVPEPEGQTSPKNAAAVF
SSVLAL
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgagggtctggaccctgggttggcagagtatgccccggccatgcattccacc
ctggatcctgtcctggatgcccacctgaacccaagtctgctgcagaatgtggagctggac
gccgagggagtggccctggagacgctccctgtgcaggagtccatgcacatcatggaaggt
gtctactcggaactgcacagcgtggtggctgaagtgggcgtgcctgtctccgtctcccac
tttgacttgcacgaggagatgctgtgggtggggagccatgggggtcacgccacctcattc
tttggcccagccttggagcgctactcatcctttcaggtcaatggcagcgatgacatccgg
cagattcagagtctggagaatggtatcctttttctcaccaagaacaacctcaagtacatg
gcccgtggggggctcatcatatttgattatctgctggatgagagcgaggacatgcacagt
ctgctgctgaccgacagcagcacgctcctcatcggtgggctgcagagccacattctggag
atggatctcaacaccgtacaggaaactcagaagtacgccgttgagacacctggagtcaca
gtcatgagacagacgaatcgcttcttcttctgtggccacacatcgggcaagatttccctg
cgggacctgcgcacatttaaggtggaacacgagttcgatgccttctcagggagtctgtca
gattttgatgtgcatggcaatctgctggccgcctgtggcttctccagccgcctcactggc
ctggcctgcgaccgtttcctcaaggtgtacgacttgcgcatgatgcgtgccattacaccg
ctccaggtgcacgtggatcctgccttcttacgcttcatccccacgtatacttcccgtctc
gccatcatctcgcagtcagggcagtgccagttttgtgagcctaccggcctggccaacccc
gcagatatctttcacgtgaatcctgtgggccctctgctcatgacagttgacgtgtcagcc
agcaagcaggccctggcctttggggactctgagggctgtgtgcatctctggaccgactcc
cccgagccctccttcaacccctattctcgggagacggagttcgccctgccctgcctcgta
gactcctcgctgcctcccctggactggagccaggacctgctgcccctctccctcatcccg
gtgcccctcaccacggacacactcctttccgactggcctgctgccaactccgcaccagcc
cccaggcgagctccccccgtggatgcagaaatcctgcgcaccatgaagaaagtgggtttt
attggctacgcccccaacccccgtaccaggctgcgcaatcagattccttatcgactcaag
gagtcagacagtgaatttgacaacttcagtcaggtcaccgagtcaccaataggccgggaa
gaagagccacacctgcacatggtctctaagaaataccgcaaggtgaccatcaaatattcc
aagctggggctggaagactttgacttcaaacactacaataagactctgtttgctgggtta
gagcctcacatccccaatgcctactgcaactgcatgatccaggtgctctatttcctggag
cctgtgcgctgtctcatccagaaccacctttgccagaaggagttctgcttggcatgtgag
ctgggcttcctcttccatatgctagacctctctcgaggtgatccttgccagggcagtaat
tttcttcgagcattccgcaccattcccgaggcctcagccctcggtctgatcctggctgac
tcagatgaggcttcaggcaagggcaacctggcccgactcatccagaggtggaatcgcttc
attctcacccagctccatcaagatatgcaggaactggaagtgccccaagcataccgtggt
gctggaggcagcagcttttgctcatcgggggactctgtcattgggcagttgttcagctgc
gagatggagaactgcagtctgtgccgctgtggcagtgagaccgtgcgctcctcatccaca
ctgctcttcacactctcctaccccgaggataaaagtgggaagaactacgactttgcacag
gtgctgaagcgcagcatctgcctggagcagaacacgcaggcctggtgtgacaactgtgag
aagtaccagcccacgattcagacccgcaacatccgccacctgccagatattcttgtcatc
aactgtgaggtcaacagctccaaagaagcagatttctggagagtgcaggctgaggttgcc
ttcaagatggccatcaagaagcacggtggcgaactctccaagagcaaggagttcgcccta
gctgaccggagggaggtagggagtcctgaaggggtgctgctgtgtccctccatcgaggag
ctcaagaatgtctggctgcctttctccattcgcatgaagatgaccaagaacaaagggctg
gatgtttgcaattggactgatggggatgacatgcaggttgttgaaaaactggggtggggc
ccagccagagcagaggaggaacacggtgtctgtgtctatgacctgatggctactgtggtc
cacatcctggactcgcgcccagggggcagtttggtggctcatatcaaagtgggagagacc
taccaccagcgcaaggagggagttactcaccagcagtggtatctcttcaatgactttctt
attgaaccaattgataagcatgaagctgttcagtttgacatgaattggaaagtacctgct
atcctttattacgtcaaaagaaatctcaactccagatacaatctgaacataaagaaccca
attgaggccagcgtcctgctggcggaagcctcactggcccggaagcagcggaaaacacac
acgaccttcatcccattgatgctgaatgagatgccccaggttggagacctggtgggcctc
gatgctgagtttgtcaccctcaatgaggaagaagcagaattacgcagcgatggtaccaag
tccaccattaaaccaagccacatgtctgtcgcaaggatcacctgtgttcggggccaggga
ccaaatgagggtatccccttcatcgatgactacatctctacccaggagcaggtggtggat
tacttgactcagtactcggggatcaagccaggagacctggatgccaaaatctcctccaag
cacctcaccaccctcaagtctacctacctaaagctgcgattcctcattgacattggtgtc
aagttcgtgggccacggactgcagaaggatttcagggtcatcaacctcatggtacccaag
gaccaagtactggacactgtgtacctattccacatgccccggaaacgaatgatttctctg
cgattccttgcctggtactttctggacctgaagattcaaggggagacccatgacagcatc
gaggatgcccgcacagccctgcagctctaccgcaagtatctggagctgagcaagaacggc
accgagcccgagtccttccacaaggtgctcaaggccctttatgagaagggccggaagatg
gactggaaggtgcccgagcccgagggccagacgagtcccaagaatgcagcagctgtcttc
tcctccgtgctggcactctga
DBGET
integrated database retrieval system
