Ochotona curzoniae (black-lipped pika): 121159719
Help
Entry
121159719 CDS
T11174
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ocz Ochotona curzoniae (black-lipped pika)
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ocz03016
]
121159719 (RTCB)
Enzymes [BR:
ocz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
121159719 (RTCB)
Transfer RNA biogenesis [BR:
ocz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
121159719 (RTCB)
Prokaryotic type
tRNA splicing ligases
121159719 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
121159719
NCBI-ProteinID:
XP_040841034
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
VEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagctacaatgatgagctccagttcctggacaagatcaataaaaactgctgg
aggatcaagaagggcttcgtgcccaacatgcaggttgaaggagtcttctacgtgaatgac
gctctggagaagttaatgtttgaggaattgcggaacgcctgtcggggtggtggtgttggt
ggcttcctgcctgctatgaaacagattggcaatgtggcagccttgcctgggatcgttcat
cgatccattgggcttcccgacgtccattcaggctatgggtttgccattgggaatatggca
gcctttgatatgaatgacccagaagcggtggtgtccccaggcggtgtcggatttgacatc
aactgcggtgtccgcctactgagaaccaacttggatgagagtgacgtccagccggtgaag
gagcagcttgcccaggccatgtttgatcacattcctgtcggggtgggatccaaaggtgtc
atccccatgaatgccaaagacttggaagaggccttggagatgggcgtggactggtcgctg
agagagggctacgcctgggccgaggacaaggagcactgcgaggagtacggcaggatgctg
caggcagaccccaacaaggtgtctcctcgggccaagaagagaggcctgcctcagctgggg
accttgggagccggcaaccactacgcggaaatccaggtggtggatgagatcttcaacgag
tacgcagccaagaagatgggcattgaccacaagggccaggtgtgcgtgatgatccacagc
gggagcagaggcctgggccaccaggtcgccacagacgcactggtggctatggaaaaggcc
atgaagagagacaagatcatcgtcaatgaccggcagctggcctgtgctcggatcgcttcc
gtggaaggtcaggactacctcaagggcatggcggccgccgggaactacgcctgggtcaac
cgctcctccatgacgttcctaacccgtcaggcttttgccaaggtcttcaataccaccccc
gatgacttggatctgcacgtgatctatgacgtctctcacaacatcgccaaagtcgagcag
catgtggtggatgggaaggagcggacgctgctggtgcacaggaaggggtccacgcgggcg
ttcccgcctcaccatcccctcatcgctgtcgactaccagctcactggacagccagtgctc
attggtggcaccatgggaacctgcagttacgtccttactggcactgagcagggcatgacc
gagacctttggaacaacctgccacggagcgggccgagcactgtcccgagcaaagtcccgg
cgtaacctggacttccaggatgtcttagacaagctggcggacatggggattgcaatccgc
gtggcctcgcccaaactggttatggaagaggctcccgagtcctataagaacgtgacggat
gtggtgaatacctgccatgatgctgggatcagcaagaaggccatcaaactgagacccatc
gctgttatcaaagggtag
DBGET
integrated database retrieval system
