Ochotona curzoniae (black-lipped pika): 121160309
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Entry
121160309 CDS
T11174
Symbol
VCAN
Name
(RefSeq) versican core protein isoform X1
KO
K06793
versican core protein
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz04514
Cell adhesion molecule (CAM) interaction
ocz04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
121160309 (VCAN)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121160309 (VCAN)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ocz00535
]
121160309 (VCAN)
00536 Glycosaminoglycan binding proteins [BR:
ocz00536
]
121160309 (VCAN)
04091 Lectins [BR:
ocz04091
]
121160309 (VCAN)
Proteoglycans [BR:
ocz00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
121160309 (VCAN)
Glycosaminoglycan binding proteins [BR:
ocz00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
121160309 (VCAN)
Lectins [BR:
ocz04091
]
C-Type lectins
Lecticans
121160309 (VCAN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lectin_C
EGF
hEGF
Sushi
EGF_TEN
EGF_3
EGF_2
Motif
Other DBs
NCBI-GeneID:
121160309
NCBI-ProteinID:
XP_040841933
LinkDB
All DBs
Position
Unknown
AA seq
2593 aa
AA seq
DB search
MTDSTFHVEVVTVSKWSRHEVEPTAHTDSPTTGVSRKEEETSSFIENGDKVTPLEESSQK
PSEKAIGEDVTDPGEFTVQFQPTAATGIMEKPTFTGASPTKRVPSITSTEGPLVSATMEG
SALGEGEEVDLPTPVSTIVQFAHTSDGRGLAFVNYSSTQQPTPHVDTSHTVPLSVIPELV
SSAPSEDEIPGESSQDKSVIDQTHLETAASPETMRTTTEITQGTTQEEFLGKEQTGKQVP
ALSSTAGAPVLATSIWDEQEGDGSAYTIPGDRLVTTLGRVPILETTPIVKIEHDASHLPD
AITEHRAKTDEVVTLIPRIGPKVSLSPEPEQKYETEGSSATEFVSPLSPFSTSVSQFIEE
TTTGKRVETSLDYTDVGSGLFEMPKATELPGLSTIKAMIPSDTTAMYGSVDGLPTTAVFE
PSSTPTEKLLVDRGPGEETTGGLVIIEESTSHVLPTIPSDIVAKDPESDIGREYFTTSST
PLATQPPRPPTVESKEASRPWELSTPPPPPGTKFHPDINVFIIEVRENKTGRMIDLDAIS
HPIDSESKEDEPCSEETDSKHNLFAEIIPEITNLINIDIYHSEESEGEEEECTNATDATD
ATDATDATTTPSVQYINGKHLVTTEPKGPEVAEARRGQFESVAPAQNFSDSSESDQHLFM
GSEIELSTILQPNDSAEATESFEITWKPELYSETPEQFSGGEPEVFPVVPFHEGETTEGA
ASENGLELENLMPEPTEGLLLFPEELSGEVAIDQVSPKVVSGGATEVPFAEGAEPSTSLT
HIPRVVPSSVTAAISEERSVSLTGNPQPDGLWSTKESWVDLLARQSPDLSGSSSHLVPEG
SGGEADELTDKVFAVFTELSQGNATDSLTTPDTNKLMLTQSLLDIPTATVYLVSQQATKV
MATQSVSEASSPGGGFSTATEGTRRREKEMKDKEEEKEGATGAVPTVESVHSATARTEQV
ILASELENVKAATISDSAGRETTGAWIAPTWSRREPTRSALVWREMHASDEVGTGFPEHN
DGRQHEGQEALPTHPQSPAFPFMEQGSGDATADPETTTLPPWPLNLEPETQTNNEEVATF
SPHVGPEFSSEPTVQVLSTGSIREVAEVDRQMPEETAEGAGGLRPSAEMRSFSTGFPLEQ
EFSGDAGEYVTASQSITQEEMLVMEGSGEPAFSDTPTSLPTTPSSVHVSHTPASRRPGSP
VIDPSAFPWEAFPASVEGSGEQLATAIGSFEPVLHNVVGNISQTNSPFVDQVMGEVGTAG
EARERATVLPATEGTEAPPAEEDTSTATGTVPLKFPQTMEPARLWSIQEAISTRAGTEDE
MEKTQGPRSLESSQSSLAPDQTDFDSQTSSGTELQTTGSSTLTTKDTEGTDKEVGGKDSP
FVNTVTPEPKAEHSQSHTARPQATENSHLFFAPASVTEFTSAEGAVTDSSVQVEDTVTPF
LSGLRPTGRESGAGLLFSGMGSGEEMLPAFPTVSVNFTEMEQIISTLHPHTSQVESSKTS
ILSSKTEDEENMENVVTEAGPHGSKMNISEGSEAALHTDLTQALSDPGAEGPTMTPLPFA
KDPHHPQDHTPGWTKETPAGSLQSTTAQASDESVAAAEAKGTSTSSIVAVIQTSGLEMAP
GSVTSEPKPADLFSEHSGEGSGGLVVIDVTPTSRTTQTSRQGSLVFASEGSLATQPEAVT
ADGVHMVSEGLPHSTHSDATSTWPSPTLHGKSTEGATAAASQGHYGRVEDSTVNPNRRKG
PENIFIDGIFMDKEDKDLIVAITENSILEMLPELTSDKNTIIDIDHTRPVDEDILGMQTA
VEAEGPSGPHSSSEESPAGQEASHYLSLTEETPEGSGDTLPAAHTQATHSPSRASHDGSQ
PDHRVSDLPSGTPDPSIKVQLENLPPTIMSLSIPAESATVPPQWEEPTLEAKGLDDTFES
STLSDGQAVADQSDIMSTQGHVGRTQEENEEKPAGPSFQPEFSSGAEEAWKDPTPLVTIG
EPMAQSLTEAPREMGGTDPALHTERTSTVAALARASPQILSSPVSIDSGSGASEHTSFPL
PSALPSLEVSPDPVSSEESFREAHADVEVTFKPSHEAYFSATEPLSSSPSPELDPSEEGG
SPEFPEEMEASPVEPITEEGTGTPQDPPKKASTQLPGETMTVLPSVGTTQAGMVIPAAGE
VRSESSPRWPHLTSAPVTYRVEARVVPQPSPNPHTAEESTVPPPWETDLETQASVTREGS
RVATAAEEQASGGVPGARSQAAGSAAEFNPQLATPPFSLPETSNETGFLIGLHEESIEGT
AVYLPGPDRCKTNPCLHGGTCYPTETSYVCTCVPGYSGDQCELDFDECHSNPCRNGATCV
DGFNTFSCLCLPSYVGVLCEQDTETCDYGWHKFQGQCYKYFAHRRTWDAAERECRLQGAH
LTSILSHEEQMFVNRLGHDYQWIGLNDKMFEHDFRWTDGSTLQYENWRPNQPDSFFSAGE
DCVVIIWHENGQWNDVPCNYHLTYTCKKGTVACGQPPVVENARTFGKMKPRYEVNSLIRY
HCKDGFIQRHLPTIRCLGNGRWAMPKITCMNPSAYQRTYSKKYLKNSSSAKDNSVNTSKH
EHRWSRRWQESRR
NT seq
7782 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacagtactttccatgtggaggtagttactgtgtcaaagtggtcacggcatgag
gtagagcccacagcacataccgattccccaaccacgggggtaagcagaaaggaagaagaa
acgtcgagtttcattgaaaatggagacaaagtcactcctcttgaggaaagttctcaaaaa
ccatcagagaaagctattggggaggatgtaacagatcctggggaattcacagtgcagttt
cagccaactgcagccaccggtattatggaaaagccaaccttcacaggtgcttcacccacc
aaaagagtcccatctatcacaagcacagagggcccactcgtttctgcaactatggaagga
agtgctttgggtgaaggagaagaggtggacctgcctacgccagtgtccactatcgtgcag
tttgcacacacttcagatgggcgaggattggcatttgttaattatagtagcacccaacag
cccactcctcatgtagacacttcccatactgttcctctctctgtaatccctgagttagtg
tcttctgcgccctcagaagatgaaattccaggtgaatcctctcaagacaaaagtgtcatt
gatcagactcaccttgaaacagctgcttctccagaaacaatgagaacaacaacagaaatc
acacaggggaccactcaggaagaattccttggcaaagaacaaacaggaaaacaagttcct
gccctcagttctacagcaggtgcaccagtgttggcaacaagtatctgggatgaacaagaa
ggtgatggatcggcatatacaatccctggagataggttggtgaccactttggggagggtg
ccaattttagaaacaactccgattgtaaaaatcgagcatgatgcgtcccacctcccggat
gccatcactgagcacagggcaaaaacagatgaagtggtcactctgataccaaggattgga
cccaaagtatctctaagtccggaacctgaacagaagtacgagacagaaggtagtagtgca
acagaatttgtatcacctttgagtccatttagcaccagtgtttcccaatttatagaggaa
accactactgggaaaagagttgaaacatctctagattatactgatgtaggttcaggatta
tttgaaatgcctaaagccacagagcttccaggattgtcaaccattaaagccatgattcca
agtgataccactgccatgtatgggtcagtagatggacttcccacaacagcagtgtttgag
ccgtcttcaacacccactgagaaacttctcgttgacagagggcctggggaagagacaacc
ggtggcttggtgatcattgaagaatcaacatcccatgttcttcccactatccccagtgat
attgtagccaaggacccagaaagcgatattggtagagagtatttcacgacttccagcact
cctctggccacacagcctccaagaccaccaactgtggaaagcaaagaggcctccagaccc
tgggagctctccaccccaccacccccaccggggacaaaattccaccctgacataaatgtt
tttattattgaggtcagagaaaacaagacaggtcgaatgattgatttggatgccattagt
catccaatagattcagagtctaaagaagatgagccctgtagcgaagagacagactcaaaa
cacaatctgtttgccgaaatcatacccgaaataactaacctaattaacatagatatatac
catagtgaagagagcgaaggggaggaggaagagtgtaccaacgccactgacgccactgat
gccactgacgccactgacgccacgaccaccccatcggtgcagtacatcaatgggaaacac
ctggtcaccacagagcccaagggcccggaagtcgcagaagccaggcgcggccaatttgaa
agtgttgcacctgcgcagaatttctcagacagctccgagagcgatcagcatctattcatg
ggatctgagattgagctgtccaccatccttcaacctaacgactccgcagaagccaccgaa
tcattcgaaatcacatggaagcctgagctttactcggaaactccagagcagttttcaggt
ggtgaaccggaagtcttccccgtggtgccattccatgagggagaaaccacagagggggca
gcatccgagaatggccttgaactcgagaatctgatgcccgaacctacagagggtctactt
ctgtttcccgaagaattgtcaggagaggttgccattgaccaagtgtctccaaaagtagtc
tctgggggagcgaccgaggtaccatttgctgagggggcagagccgagtacttctctcaca
cacattcccagggtagtgccaagttctgtgacagcagctatttcagaggaaagatcagta
agcttaacaggaaacccacagcctgatggcctatggtctaccaaagaaagctgggtagac
ctgttggccagacagagcccagacctctcagggagttcctcacatctggtcccagaaggt
tctggtggagaagcagatgagttgacagacaaggtgtttgctgtgtttactgagctctca
cagggaaatgccacagattcactcactaccccagacactaacaagttgatgctcacacaa
agccttctagatattcccacggccaccgtctacttggtttcccaacaagccacaaaagta
atggccacccagtcagtaagtgaagcgagctctcctgggggaggtttcagtacagctact
gagggaacgagaaggcgggagaaggagatgaaagacaaagaggaagaaaaggagggagcc
acaggtgcagttcccacagttgagtcagtacattcagctactgcaagaacagagcaagtc
attttagcttcagaactggaaaatgtaaaggcagctaccattagtgattcagctggaaga
gagaccactggggcctggatagcacccacatggtccagacgggagcccacaaggtctgct
cttgtctggagagagatgcatgcttctgatgaggtggggacaggattccctgagcacaat
gatggccgtcagcatgagggacaagaagcactgcccactcacccacagagccctgccttt
ccctttatggagcagggctctggagatgccactgctgaccctgagaccactaccctccct
ccatggccattaaacctagaacctgaaacccaaaccaacaacgaagaagttgccactttc
tctccccacgtgggacctgaattttcctctgagcccacagtgcaagtcttgagcactggt
agcattagagaagttgctgaggtggacaggcaaatgcccgaggagactgctgagggcgca
ggagggctgaggcccagcgcggagatgaggagcttttcgacagggtttcctttggagcag
gagttcagtggtgacgctggagagtatgtcacagcatctcagtccatcacacaagaggaa
atgctggtgatggaaggctctggggaaccagcctttagtgatactccaacttccctacct
accacaccttcgtcagttcatgtcagtcacacacctgcctcaagaagacccggtagccct
gtgatcgacccctcagccttcccttgggaagcattcccagcctccgtggagggctcaggg
gagcagctggccacagccatcggctctttcgagccagttctgcacaatgtagtaggtaac
atttcccagacaaattccccttttgttgatcaagtaatgggagaagtgggtactgctggt
gaagctcgtgaaagagccaccgttttgccagcaacagaaggcactgaagcccccccagca
gaggaggacacaagcacggccactggcacagtgcccttgaagtttccccaaacaatggag
cccgccagattatggtccattcaagaagctatttctacaagagcggggactgaagatgaa
atggagaaaacccaagggccaaggtctttggaatcctcccaaagctctcttgcacctgat
caaacagattttgattcccaaacatctagtggcactgaactccaaaccacaggttcttct
acactaacaacaaaggacacagaaggcactgacaaggaagtggggggaaaagacagtccc
ttcgttaacaccgtgactccagagccgaaggcagaacattcacagtcacacactgctcgc
ccacaagctacagagaactcacaccttttctttgcgcctgcctcagtgactgaatttacg
tcagctgaaggtgccgtcacagattcatcagtccaagtggaagacaccgtgacccccttc
cttagtggactgcggccgacaggcagggagtcaggcgctggtctcttgttctcgggaatg
gggtcaggagaagaaatgttgcccgctttccctacagtgtcagtgaattttactgaaatg
gaacaaatcataagcacgttacatccccatacttctcaagtggaaagttcaaaaacaagt
atcttaagcagtaaaacagaagacgaagagaacatggaaaatgtggtaactgaagccgga
ccacacggctctaagatgaacatttccgaaggtagcgaggcagcacttcacacagatctc
acacaagctctaagtgaccctggggcagagggacccaccatgacaccactgccttttgcc
aaggatcctcaccaccctcaggaccacactcctgggtggacaaaggaaactccagctggg
tcactccaaagcacaactgcccaagcctctgatgagagtgttgcagcagcagaagctaaa
ggaacctcaacctcatccatagttgccgtcatccagacgtctggtctcgaaatggccccc
ggatcggtgacatcagagcccaagccagctgatttgttttctgagcattctggagaaggg
tctgggggattggttgttattgatgtcacccccacgtctagaactactcagacctcccga
caaggaagcctcgtgtttgcttctgaggggtccctggcaacacaacctgaagctgttact
gctgatggagtccacatggtgtctgaggggcttcctcattcaacgcacagtgatgccact
agcacatggccaagtccaacgctgcatgggaagtccacggaaggggccacagccgctgct
tcccagggccattatggaagagttgaggattctaccgtcaatcctaacagaagaaaaggc
cctgaaaatattttcatcgatggcattttcatggacaaggaggataaggatctgatagtg
gccatcacagagaacagcatccttgaaatgctccctgagctcacctcggataagaacacc
atcatagacatcgatcacaccagacctgtagacgaagacatccttggaatgcagacagcc
gtggaagcagagggcccctcgggcccacacagcagcagtgaggaaagccctgccggccag
gaggcctcccattacctctccctaaccgaggaaactcccgaaggctctggtgacactctt
ccagccgcccacactcaggccacacacagtccatcaagggcttcccatgatggaagccaa
ccagatcacagggtctctgacctcccatccgggacccctgaccctagcataaaagtccaa
ttggagaatttgcctccgaccatcatgtctctgtccatccctgcagaatcggccacggtc
cctccacagtgggaggagccaacgctggaagccaaaggcttggacgacacgtttgagtcc
agcactctgtctgacggtcaggctgtggcagaccagagtgacatcatgtccacccagggg
catgtgggaaggacacaggaggaaaatgaagaaaagccagcgggtccctctttccaacca
gaattctcttcgggagctgaggaggcatggaaggaccctactccccttgttactattggt
gagcccatggctcagagtctaaccgaggctcccagggagatgggaggaaccgaccctgcc
ctgcacactgagaggacatcaacagtggcagcgttggcaagggcgtccccacagatattg
tcatcacctgtctccattgattcaggcagtggagcctcggaacacacaagcttccccctc
ccgagtgctctgccaagcctggaggttagcccagaccccgtgtcctcagaggagtctttt
agggaagcccatgcagatgtggaagtgactttcaaaccatcccatgaagcctatttttct
gcaacagagcctctatcttcatctcccagcccagaattagacccctcagaggaaggaggt
agccctgagttcccagaagagatggaagcttctcccgtagagccaattactgaggaaggg
actgggactccccaggacccccccaaaaaggccagcactcagcttcctggagaaacaatg
acagttttgcccagtgttgggacaacgcaggctgggatggtcatcccagctgctggagag
gtcaggtcggaaagttctccacggtggccacatcttacctctgctcctgtgacctacagg
gtggaggcccgtgtggtgcctcagcccagccccaacccacacactgccgaggagtccaca
gttcctcctccatgggaaacagatctggagacccaagcttcagtcacgagggagggctcc
agagtagcgacagcagcagaagagcaggcatctgggggagtcccaggtgccaggagccag
gcagcaggaagtgctgcagaattcaatccccagcttgccacgcctccattttcccttccg
gaaacctctaatgagactgggttcctgattggccttcatgaagagtcaatagaaggcaca
gcggtctatttgccaggacctgatcggtgtaagacaaacccatgcctccacgggggcacc
tgctacccgacggaaacttcctacgtgtgcacctgtgtgcccggatacagcggggatcag
tgtgaactcgattttgatgagtgtcactctaacccctgtcggaatggagccacttgtgtg
gatggcttcaatacgttcagctgcctctgtctgcccagctacgttggcgtactctgcgaa
caagacacggagacttgcgactacggctggcacaaattccaggggcagtgctacaagtac
tttgcccaccggcgcacgtgggacgcagctgaacgggaatgccggctgcagggcgcccac
ctcaccagcatcctctctcacgaagaacagatgtttgtgaaccgcctgggtcacgattac
cagtggatcggcctcaatgacaagatgttcgagcatgatttccgctggacagacggcagc
actctgcaatacgagaactggaggcccaaccagccggacagcttcttctcggcgggggaa
gactgcgtggtgatcatctggcacgagaacggccagtggaatgacgtgccttgcaactac
cacctcacctacacctgcaagaaaggaacagttgcttgcggccagccccccgtcgtggag
aacgccaggaccttcggaaagatgaagcctcgttacgaagtcaactccctgattcggtac
cactgcaaagacggcttcattcagcggcacctcccaaccatccggtgcctagggaatgga
agatgggctatgcctaaaattacctgcatgaacccatccgcataccaaaggacttattct
aagaaatacttaaaaaattcctcatcagccaaggacaattcagtcaatacgtcaaaacat
gaacaccgttggagccggaggtggcaggagtccaggcgctga
DBGET
integrated database retrieval system
