Ochotona curzoniae (black-lipped pika): 121160510
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Entry
121160510 CDS
T11174
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03013
Nucleocytoplasmic transport
ocz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121160510 (UPF1)
03015 mRNA surveillance pathway
121160510 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocz03019
]
121160510 (UPF1)
Enzymes [BR:
ocz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121160510 (UPF1)
5.6.2.5 RNA 5'-3' helicase
121160510 (UPF1)
Messenger RNA biogenesis [BR:
ocz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121160510 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
121160510 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
121160510
NCBI-ProteinID:
XP_040842315
LinkDB
All DBs
Position
Unknown
AA seq
1122 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGAGGAGGP
GGAGAGGAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDSYYTKDLPVHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEI
CLRYKGDLAPLWKGIGHVIKVPDNLTQRPDYGDEIAIELRSSVGAPVEVTHNFQVDFVWK
STSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIVKCQLPKRFTAQGLPDLNHSQV
YAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ
TGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYR
ALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQ
LILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIF
YEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKI
TTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDF
IILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQK
VLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMSTAMYDAREAIIPGSVYDRSSQGRPS
NMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKVG
RGGRQKNRFGLPGPSQPTLPSSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPE
LSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagacgctcaccttcctggacacggaggag
gccgagctgctgggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
ccgagtcagacgcagacgccccccgggggccccggcggcgcgggaggagcgggcggcccc
ggcggagcgggcgcgggcggcgcggccggacagctggacgcgcaggtcggccctgagggc
atcctgcagaatggcgctgtggacgacagcgtggccaagaccagccagctgctggccgag
ctcaacttcgaggaggacgaggaggactcgtactataccaaggacctgcccgtgcacgcc
tgcagttactgcggcatccacgacccggcctgtgtggtctactgcaacaccagcaagaag
tggttctgcaatggccgcgggaacacctccggcagccacatcgtgaaccacctggtgcgg
gccaagtgcaaggaggtgaccctgcacaaggacgggccgctcggggagacggtgctcgaa
tgctacaactgcggctgccgcaacgtcttcctgctgggcttcatcccggccaaggctgac
tcggtggtggtgctgctttgccggcagccgtgcgccagccagagcagcctaaaagacatc
aactgggacagctcgcagtggcagccgctcatccaggaccgctgcttcctgtcctggttg
gtcaagatcccctcggagcaggagcagctgcgggcacgccagatcacggcacagcagatc
aacaagctggaggagctgtggaaggagaacccctcggccaccttggaggacctggagaag
ccgggtgtggacgaggagccgcagcacgtgctactgcgctacgaggacgcctaccagtac
cagaacatcttcgggccgctcgtcaagctggaggccgactacgacaagaagctgaaggag
tcccagactcaggacaacatcacggtgaggtgggacctgggcctcaacaagaagaggatc
gcctacttcactctgcccaagaccgactctgacatgcggctcatgcagggggacgagatc
tgcctgcgctacaaaggcgacctggcgcccctgtggaagggcatcggccacgtgatcaag
gtccctgacaacttgactcagcgcccagattacggcgacgagatcgccatcgagctgcgc
agcagcgtgggcgcgcccgtggaggtgactcacaacttccaggtggacttcgtgtggaag
tccacctccttcgacaggatgcagagcgcgctcaagacgttcgccgtggacgagacctcc
gtgtccggctacatctaccacaagctgctgggccacgaggtggaggacgtgatcgtcaag
tgccagctgcccaagcgcttcacggcgcaggggctcccggacctcaaccactcgcaggtg
tacgccgtgaagacggtgctgcagcggccgctcagcctcatccagggcccgcccggcact
ggcaagacggtcacgtcggccaccatcgtctaccacctggcccgccagggcaacgggccc
gtgctggtgtgtgccccgagcaacatcgccgtggaccagctgacggagaagatccaccag
acgggcctgaaggtggtgcgcctgtgcgccaagagccgcgaggccatcgactcgcccgtg
tccttcctggcgctgcacaaccagatcaggaacatggacagcatgcccgagctgcagaag
ctgcagcagctgaaggacgagaccggggagctgtcgtcggccgacgagaagcgctaccgc
gccctcaagcgcacggccgagcgcgagctgctcatgaatgctgacgtcatctgctgcacc
tgcgtgggcgccggcgacccccggctggccaagatgcagttccgttccatcctgattgac
gagagcacgcaggccacggagcccgagtgcatggtgcccgtggtgctcggcgccaagcag
ctgatcctcgtgggcgaccactgccagctgggcccggtggtgatgtgcaagaaggcggcc
aaggccgggctctctcagtccctgttcgagcgcctggtggtgctgggcatccggcccatc
cgcctgcaggtgcagtaccggatgcaccccgcgctcagcgccttcccgtccaacatcttc
tacgagggctcgctgcagaatggagtcaccgcagctgaccgtgtgaagaagggctttgac
ttccagtggccacagccggacaagcccatgttcttctacgtgacccagggccaggaggag
atcgccagctccggcacctcctatctcaacaggacggaggcggccaacgtggagaagatc
accacgaagctgctgaaggcgggcgccaagccggaccagatcggcatcatcacgccgtac
gagggccagcgctcctacctggtgcagtacatgcagttcagcggctcactgcacaccaag
ctctaccaggaggtggagatcgcgagcgtggacgccttccagggccgcgagaaggacttc
atcatcctgtcgtgcgtgcgcgccaacgagcaccagggcatcggcttcctcaacgacccg
cggcgcctcaacgtggccctgacgagagccaggtacggcgtgatcatcgtgggcaacccg
aaggcgctgtcgaagcagccgctgtggaaccacctgctcaactactacaaggagcagaag
gtgctggtggaggggccactcaacaacctacgcgagagcctcatgcagttcagcaagccg
cgcaagctggtcaacaccatcaacccgggcgcccgcttcatgagcacggccatgtacgac
gcccgcgaggccatcatcccgggctccgtgtacgaccgcagcagccagggccggccctcc
aacatgtacttccagacgcacgaccagatcggcatgatcagcgcggggcccagccacgtg
gccgccatgaacatccccatccccttcaacctggtcatgccgcccatgccgccgccgggc
tacttcgggcaggccaacgggccggccgcaggccggggcacccccaaagggaaggtcggc
cgtggggggcgccagaagaaccgctttgggctgccggggcccagccagcccaccctgccc
agcagccaggccagccaggacgtggcgtcgcagcccttctcgcagggcgcgctcacgcag
ggctacatctccatgagccagccctcccagatgagccagcccggcctctcgcagccggag
ctgtcccaggacagctacctcggtgacgaatttaaatctcagatcgatgtggcgctgtcg
caagactccacctaccagggggagcgcgcctaccagcacggcggggtgacggggctgtcc
cagtactag
DBGET
integrated database retrieval system
