Ochotona curzoniae (black-lipped pika): 121160648
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Entry
121160648 CDS
T11174
Symbol
COL18A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
121160648 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocz04147
]
121160648 (COL18A1)
00535 Proteoglycans [BR:
ocz00535
]
121160648 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
ocz00536
]
121160648 (COL18A1)
Exosome [BR:
ocz04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121160648 (COL18A1)
Proteoglycans [BR:
ocz00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
121160648 (COL18A1)
Glycosaminoglycan binding proteins [BR:
ocz00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121160648 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
121160648
NCBI-ProteinID:
XP_040842545
LinkDB
All DBs
Position
Unknown
AA seq
1714 aa
AA seq
DB search
MAPDPSGRLGLLLLLACCVPIAWAQILNWIWPGEKLSPISKWVLKPHDSPVEPTLGLTTH
VDLGHGSTEPEASRSPAPADATPDAILATSPGTTKEENVAGVGAQILNVAASIRSFVQLW
DEAAPTESAAAVATLATAAFTDPLTLPRPPDEPPEHRDTLGPSTAAPDALTTTADVLAPT
APLASSGQPRASLGVSPGRTALSSPPGGAPPWGSPMPLRQLQDLHSSRGPRPTAAAPRRQ
QSEQLGGGRRALRLLPLVLGLPGAHVAPAAPTPDLLASPALAAAPAFIGDGGGGPWVSHM
ANDSARCLPLPPALPMCGHLGIGHTWLPNHLRHGRGEEVQAAVQAWGALLLSRCHPFLAW
FFCLLLAPPCSLGPPPGPPPCRQFCEAVEDACWSRLDGGRLPVACTSLPAQEDGYCVFIG
PAAEGSGDEVGLLQLLGEPPPQQVTEVEDPDVGLAYVFGPDANSGQAAHYHFPSPFFRDF
SLLFRIRPATAQAGVLFAITDPAQAVVRLGVKVSEVQDDHQLISLLYTEPGTSPTRTAAS
FRLPAFVGQWLRFALSVDAGHVALYVNCEEFQRVPFSRSAQSLPLEPGSGLFVAQAGGAD
PDRFQGSIAELSVRGDPQLSPQHCLDEEDDDDGGASGDFGSGLEENRELRREDTGTSRKP
SPPQPPPVTSPPLAEDSTIEDSRTEETEATTVATLGAHTRPASDLVSTRDGGVRSPAGHL
EKGGLKGQKGEPGAQGPPGPAGPQGPAGPAARNSDGLPVPGAQGPPGPPGLPGKDGEPGD
PGEDGKPGEAGPQGFPGTPGDVGPKGEKGDPGVGPRGPPGPQGPPGPPGPPFRHDRLTFI
DMEGSGFGGDLETLRGPRGFPGPPGPPGVPGLPGEPGRFGVNSTHTPGPAGLPGVPGREG
PPGVPGPPGPQGPPGREGQPGAPGPKGNLGDVGAPGPKGSKGDPGPVGSPGETGFVGAPG
PAGPQGPPGPPGPPGPPGPGLAAGFEDMEGSGVPFWTTAGNSEGRQGLPGAPGLKGDPGA
DGRPGPKGEVGADGAPGFPGLPGRDGALGPPGPKGEKGIQGEKGDPGKDGVGQPGLPGPP
GPPGPVVYLSEQDGTVTXTLLSVLSPQGQPGFAGLPGPAGPKGDLGSKGEQGLPGPKGEK
GEPGSIFSPDGRALAPAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGMNGLKGE
KGEPGDVSVGFGMRGPPGPPGPPGPPGPPGTPVYDSNVFAESSHPGPPGLPGLQGPPGPK
GDKGEVGPPGPAGQFPFDFIQLEAEMKGTKGDRGAPGQKGERGEPGAGGFFGSSVPGPPG
PPGPQGYPGIPGPKGDSIRGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPYRQT
VSIPGPPGPPGPPGPPGTGGASSGVRVWATYQTLLDKVREVPEGWLLFVAETEELYVRVR
NGFRKVLLGPRTPLPHGTDNEVAALQPPVVQLYEGNPHPRREQVHSTVRPWRADDILANP
PYLPDPRPYPGAPRHGSYTHLQPARPTASPEHTHQDFRPVLHLVALNSPLSGGMRGIRGA
DFQCFQQARAVGLAGTFRAFLSSRLQDLYSIVRRSDRTGLPIVNLKDEELFPSWEALFSG
TQGQLRPGARIFSFDGRDVLRHPAWPQKSVWHGSDPSGRRLTESYCETWRTEAAGATGQA
SSLLGGRLLEQTAAGCHNAYIVLCIENSFMTSSK
NT seq
5145 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccccagcggccgcctgggcctgctgctgctgttggcctgctgcgtgccg
atcgcctgggcccagatcctgaattggatatggcccggcgagaagctcagccccatatcc
aagtgggtcctcaagccccacgacagccccgtggagcccacgctgggactcaccacgcac
gtggacctggggcatggctccacggaacccgaggccagccggagcccagcgcctgccgac
gccacccccgacgccatcctggccacgagcccaggcacgaccaaggaagaaaatgtcgct
ggagtcggagcccagatcctgaacgtggctgcgagcatccggagcttcgtccagctgtgg
gatgaggctgcccccactgagagtgctgctgcggtggccacgctggctactgcggctttt
acagaccccctcaccctcccaaggccacctgatgagcccccggagcacagagacactctt
gggcccagcactgcagccccggacgccctgacgaccaccgctgacgtgctggcacccacc
gcaccacttgcctcctctggacagccccgggcatcattgggggtgtccccaggtagaacc
gctctgtcttctccgcctggtggggcccctccctggggaagtcccatgcccctgaggcag
ctgcaggatctgcacagcagcagaggaccccggcccacggcagccgccccccgtcggcag
cagtcggagcaacttggtggcggccgtcgagcactgcgcctgcttcccctggtgctgggt
ctcccgggtgcgcacgtggcccctgctgctcctacccccgacctcctggcctcgcctgct
ctcgctgcggccccagctttcatcggtgatggtggcggtgggccctgggtttcccacatg
gctaatgactctgcccgctgcctgcccctgccgcctgccctgcccatgtgcggccacctg
ggtatcgggcacacctggctgcccaaccacctgcggcatgggcgtggcgaggaggtgcag
gccgcggtacaggcctggggggcccttctgctgtcccgttgccaccctttcctcgcctgg
ttcttctgcctgctgctggcacccccatgcagcctgggcccaccacccgggcccccgccg
tgccgccagttctgcgaggctgtggaggacgcctgctggagccgcctggacgggggccgg
ctgcccgtcgcctgcacctcgctacctgcccaggaagacgggtactgtgtgttcattggg
ccggctgcagagggctccggcgatgaagtggggctgctgcaactgcttggggagcccccg
ccccagcaagtcaccgaggtcgaggaccccgacgtcgggctggcctacgtcttcgggccg
gacgccaacagtggccaggcggcccactaccacttccccagcccgtttttccgggacttc
tcgctgctgttccgcatccggccagccacggcacaggcaggggtgctgttcgccatcacg
gacccggcgcaggccgtggtcaggctgggcgtgaaggtctcggaggtgcaagacgaccac
cagctcatctcgctgctctacacggagccaggcaccagcccgacccgcacggccgccagc
ttccgcctgcccgccttcgtgggtcagtggctgcgcttcgcgctgagcgtggatgctggc
cacgtggcactctatgtgaactgtgaggagttccagagggtgcccttctcacgctcggcc
cagagcctgccgctggagccgggctcaggcctctttgtggctcaggccggaggagctgac
cctgacaggttccaggggagcattgccgagttgagtgtgcgtggggacccccagctgagc
ccccagcactgcctggacgaggaagacgatgatgatggcggggcctctggggactttggc
agtggacttgaagagaatcgagagctgcgcagggaggacacaggcacgtcccggaagccc
agcccaccacagccaccaccggtcacttctcctcccttggctgaagacagcaccatagaa
gattccagaactgaagaaactgaggcaactacggtggccacattaggagcacacacacgt
cctgcctcagacctggtgtccacgcgggatgggggtgtccggagccctgcaggccacctg
gagaagggaggcctgaagggacagaagggggagccaggagctcagggtccgcctggcccg
gctggccctcagggtcctgcaggcccagcggcccggaactctgatgggctgcctgtcccg
ggggcacaggggcctcctgggccaccagggctgccagggaaggacggcgagccgggcgac
cccggcgaagacgggaagcctggtgaagccgggccacaaggtttcccggggactccagga
gacgtgggccccaagggcgaaaagggggaccctggggttgggccgaggggacctccagga
ccccaaggacctccagggccaccaggacctccattcagacacgacagactgaccttcatc
gacatggaaggatctggctttgggggtgacctggagacgcttcggggtcctcgtggcttc
cccggaccccctggccctcctggcgtcccaggcctgccgggcgagccaggccgctttggt
gtgaacagcactcacaccccgggccctgcaggcctccccggagtgcctgggcgagagggg
ccccctggtgtccctggccccccgggaccccaaggtcccccaggaagggaggggcagcca
ggagcgccgggaccaaaaggcaaccttggcgatgtgggcgccccaggacccaagggcagc
aagggggaccccggccccgtgggtagcccaggcgagactggcttcgtgggagccccaggg
cctgctggacctcaaggaccccccggacccccagggccccctgggcctccaggaccagga
cttgcggctggatttgaagacatggaaggctccggggttcccttctggacaacagccgga
aactccgaggggcggcagggactgcccggagccccaggactcaagggggaccctggagca
gatgggagaccagggcccaagggagaagtcggtgcagatggcgcccctggcttcccaggc
ctccccgggagagatggcgctttgggacccccgggacccaagggagaaaagggaatccag
ggagagaaaggagaccccgggaaggatggggtagggcagccgggcctgcccgggccccct
ggaccccccgggcctgtcgtctacctgtcggagcaggatggcacagtgacgtgaaccctc
ttgtctgtcctctctccacagggccagcctggcttcgcaggccttcctggacctgctgga
ccgaagggcgacctgggctccaaaggcgagcagggcctgccaggacccaagggtgagaag
ggtgagcctggcagcatcttcagccccgacggcagagccctggcccccgcccagaaagga
gccaagggcgagcctggcttccgtggacccccgggcccgtacggacgtcctggtcacaag
ggcgagattggcttccctggacggccgggacgccccgggatgaacgggctgaaaggagaa
aagggcgagccgggagacgtgagcgtcgggtttggaatgaggggaccgcctggcccccca
ggccccccgggaccgccaggcccacccgggacgcccgtctatgacagcaacgtgttcgcc
gagtccagccaccccgggcctccaggactgccaggcctccaaggacccccaggacccaag
ggtgacaagggagaagtaggaccgcctggaccagcagggcagttcccctttgacttcatt
caactggaggccgagatgaagggcacgaagggcgaccgaggcgccccgggacagaaaggc
gagagaggcgagcctggggccggcggcttctttggctccagtgtgcctggtcccccgggg
ccccctggcccccagggctaccccgggattccgggtcccaagggagacagcatccggggc
ccgccaggcccccctgggcctcagggcccccctggcatcggctacgagggacggcaaggc
cctcctggcccccccggaccccctggtcccccctcctttcctggcccttacaggcaaact
gtcagcattcccggcccccctggcccgccgggacccccaggaccccctggaactgggggt
gcctcctcaggggtgagggtgtgggccacctaccagaccctgctggacaaggtccgcgaa
gtgcccgagggctggctcctctttgtggccgagacggaggagctctacgtccgtgtgcgc
aatgggttccggaaagttctgctggggccacggacgccacttccccacgggacggacaac
gaggtggccgccctacagcccccagtggtgcagctgtatgagggcaacccgcacccccgg
cgggagcaggtccactccacagtgcggccctggcgagctgacgacatcctggccaacccc
ccatacctgccagacccccggccctaccccggagcccctcgccacggctcctacacgcac
ctacagcccgcccgccccacggcctcacctgaacacacccaccaggacttccggccggtg
ctccacctggtggcgctcaacagccccctctcgggtggcatgcgtggcatccgcggggcg
gacttccagtgcttccagcaggcgcgggcagtggggctggccggcactttccgggccttc
ctgtcctcgcgcctgcaagacctgtacagcatcgtgcgccgctccgaccgcacgggcctg
cccattgtcaacctcaaggacgaggagctgttccccagctgggaggccctgttctcgggc
acccagggccagctgaggcctggggcccgtatcttctccttcgacggcagggacgtcctg
cgacacccagcctggccccagaagagcgtgtggcatggttcagaccccagcgggcgcagg
ctgaccgagagctactgcgagacctggcggacagaggcggcaggggccacgggccaggct
tcctcgctgctgggcggccggctgctggaacagacggcggctggctgccacaatgcctac
atcgtcctgtgcatcgagaacagcttcatgacctcctccaagtag
DBGET
integrated database retrieval system
