Ochotona curzoniae (black-lipped pika): 121161655
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Entry
121161655 CDS
T11174
Symbol
COL20A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
121161655 (COL20A1)
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Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
121161655
NCBI-ProteinID:
XP_040844115
LinkDB
All DBs
Position
Unknown
AA seq
991 aa
AA seq
DB search
MGRPISRKGQSAASGHLRLAVLPEDQLQMKWTEWEGSGLGYLVQVKPLTGDTEQEVMLTT
KATVGGLGPSKRYATHVFALTGSEPVLLARRAFVILLLAPTPADIVLLVDGSWSVGHTHF
QQVKAFLASVIAPFDIGPEKVQIGLTRYSGDPRTERNLKSFGSQEQVQAAMRGLHYKSGN
TFTGLALAQLLDHNLXPEAGLSPEAATVVLLVMDGKSQDDVREAVRTLRDRHIAVFTVGM
KNADESELKLLASPPVDVSVHSVLDFPQLGTLTGLLSWLICQQVQGRYLAGAIGSRAALA
PAPPLDPFPGPTGLVLTQVTSSSAHVSLSPAAQPPLKYRILWRPARGGAPREVTVEGSAS
AAELSSLRPGTNYMVSVLPVYEGRAGRGLRGQVTTDMHVASAVAPTRPLGFSEVTHDSAC
VSXESPPRPLHLVRVSYISRDAGHVGQVEVPENTTSATLGPLASSTTYSDHVTYLYXRGS
SSKLTGHVATRKAPRPSQLAVTELSGGAVRLSWVAAASPRVQGYHVQWTPLARGQAHELS
VPGTVSTAVLRSLGRHMEQLVSARAQYGSEPVSLRYTPSSCCEAEPPARLALVSETPGSL
WVSWSPPRGHVLRYQLLYVPASRSGPELSVSVPGYWSHVTLPKLLATTTYRXLVLAVYTT
GESVAVSATGRTGEPDRVHVAVSRSRVRLYVDCQQVAEKPPGEARSPPAHGFVILGRLAS
AQGSENNSAPFQLQALQVTCSETWPKEDQCELPAMSSRQSCPAFPATCAFQSLGPPGPQE
PPGKSGLPGQTGPEGLGGQQGSSGTQGRPIQGPVGPPGIKGEKGDPGLPGLQGQPGHQGX
PGRVGLQGPKGMRGLEGTAGSPGPPGPGXGFQGSAGARGSLGECGXPGAVGPTGLPGPKR
ERGEKGEPQSLTATFQLVSQGCEAAVQAHLRGLNVFPHKEARPPVPILEEAARPDGPPAL
HVLGGPQGPPNPKKQDPVEPALYPGPTQPVS
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgggcagacccatctcccgcaagggccagtctgcagctagcgggcacctgaggctggcc
gtgttgcctgaggaccagctgcagatgaagtggacggagtgggagggcagtggcctggga
tacctggtgcaggtgaagcccctgacaggggacacggaacaggaggtgatgctgaccacc
aaggccaccgtggggggcctaggcccctccaagcgctatgccacacatgtctttgcactt
acaggctcggagcctgtcctgctggctcggagggcgtttgtgattctgctgcttgcccct
acgcccgctgacatagtcctcctggtggacgggtcctggagtgttggccacacccacttc
cagcaggtcaaggcctttctggccagcgtcatcgcaccctttgacattgggccagagaag
gtacaaataggccttacccggtatagtggagaccctcgcactgagaggaacctgaagtcc
tttggcagccaggagcaggtgcaggcagctatgcgtggcctgcattacaagagcgggaac
acattcacaggcctggccctggctcagctgttggaccacaatctgtagccagaggctggg
ctgagtcccgaggcggccaccgttgtgctcctggtgatggacggcaagtcccaagatgac
gtgcgtgaggctgtccggaccctcagggaccggcacattgctgtcttcactgtgggcatg
aagaacgcggatgagagtgagctgaagctcctggcatctccacccgtggacgtcagcgta
cacagcgtcctggatttcccacagctgggcacactgactggcctgctcagctggctcatc
tgccagcaggtccagggcagatacctggctggggctataggcagcagggcagctctggct
cccgctcctcccttggaccccttcccaggcccaactggcctagtcctgacccaagtgacc
tcctccagcgcccacgtgtccttgagcccagctgctcagccgcccctcaagtaccggatc
ctgtggcggcctgccaggggaggagctcctagggaggtgacggtggaggggtctgcatcc
gcggcagagctgagcagcctgcgccccggtaccaactacatggtctccgtgcttccagtg
tatgagggcagggctggtcggggcctgaggggtcaggtgaccacagatatgcatgtcgcc
tctgctgtggcccccacgaggcccctgggcttctcagaggtgactcatgactcggcctgc
gtgtcttaggagagccctccaaggccactgcacctggtcagggtcagctacatctccagg
gatgctggccatgtaggccaggtggaggtccctgagaacaccacctcggccaccctgggg
cccttggcctcttctaccacgtacagcgaccacgtcacctacttgtacncccggggcagc
tcctccaagctaactggccatgtagccacgcggaaagccccccgccccagccagctggcg
gtgacagagctgtcaggcggtgcggtccggctgtcatgggtggctgctgcctcacccagg
gtccaggggtatcacgtccagtggacgcccctggcaaggggccaggcccacgaactctcc
gtcccgggcactgtgagcaccgccgtgctacgcagtctgggccggcacatggagcagctg
gtcagcgcgcgggctcagtatgggagtgagcctgtgtcgctccgctacactccctctagc
tgctgtgaggcggaacccccggccaggctggccctggtctctgagacccccggcagcctg
tgggttagttggagcccaccccgtggccatgtcctccgctaccagctcttgtacgtgcca
gcctcccgctcagggccggagctgtcggtctctgtgccaggctactggagccatgtgacc
cttcccaaattactggctaccaccacatacaggntcttggtattggctgtctacaccacg
ggggaaagtgtggctgtgtctgccacgggccgcacgggtgagccagacagggtgcatgtg
gccgtgagtcgctccagggtccgcctgtatgtggactgtcagcaagtggctgagaagccc
ccaggggaagccaggagccctcctgcccacggctttgtcatactggggaggctggcctca
gcccagggctctgagaacaattccgcaccattccagctccaggccctgcaggtcacatgt
agtgaaacctggcccaaggaggaccagtgtgagctccctgccatgagcagtagacagagc
tgcccagcctttcctgccacctgtgccttccagagtctgggaccaccaggaccccaagag
cccccaggaaagtcggggctgcccggacagacgggacctgagggcctgggaggtcagcag
gggtcatcagggacacagggccgccccatccaggggcctgtgggaccaccagggatcaaa
ggagagaagggtgaccctggactcccaggcttacagggccagcctggacaccagggcncc
ccaggaagagtgggcctccagggacccaagggaatgagaggtctggagggcaccgctggc
tcccctggccccccaggccccgggtagggcttccagggttcggcaggggccaggggctcc
cttggggagtgtgganccccaggggctgtggggcccacggggctgccaggacccaaaagg
gagcgaggagagaagggcgagccgcagtccctcacagccaccttccagctggtgagccag
ggctgcgaggcggccgtccaggcgcacctgcgaggcctgaacgttttcccgcacaaggag
gccaggcccccagtacccatcctggaggaagcagccaggccagatgggcctcctgctctg
catgtgctggggggtccccaagggccccccaatcccaagaagcaggaccctgtggagcca
gccctgtacccgggtcccacgcagccagtgagctag
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