KEGG   Ochotona curzoniae (black-lipped pika): 121161663
Entry
121161663         CDS       T11174                                 
Symbol
RAE1
Name
(RefSeq) mRNA export factor
  KO
K14298  mRNA export factor
Organism
ocz  Ochotona curzoniae (black-lipped pika)
Pathway
ocz03013  Nucleocytoplasmic transport
ocz05014  Amyotrophic lateral sclerosis
ocz05164  Influenza A
Brite
KEGG Orthology (KO) [BR:ocz00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    121161663 (RAE1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    121161663 (RAE1)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    121161663 (RAE1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ocz03019]
    121161663 (RAE1)
   03036 Chromosome and associated proteins [BR:ocz03036]
    121161663 (RAE1)
Messenger RNA biogenesis [BR:ocz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     121161663 (RAE1)
Chromosome and associated proteins [BR:ocz03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    121161663 (RAE1)
SSDB
Motif
Pfam: Beta-prop_EML_2 WD40 WDR55 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_Nup120_160 WDR90_beta-prop_4th Beta-prop_SPT8
Other DBs
NCBI-GeneID: 121161663
NCBI-ProteinID: XP_040844126
LinkDB
Position
Unknown
AA seq 368 aa
MSLFGTTSSFGSSGTSMFGSTTTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQA
IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPIAACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
ELKPRNKK
NT seq 1107 nt   +upstreamnt  +downstreamnt
atgagtttgtttggaacgacctcaagctttggaagcagcgggaccagcatgtttggcagc
acgaccacagataatcacaaccccatgaaggacattgaagtgacctcttccccggatgac
agcatcggctgtctgtctttcagcccgcccaccttaccagggaacttcctcatcgctggg
tcatgggcaaatgatgtgcgctgctgggaagttcaagacagtggacagacaattcccaaa
gcccagcagatgcacaccgggcctgtgctcgatgtctgctggagtgatgatgggagcaaa
gtgtttactgcatcttgtgataaaactgccaagatgtgggaccttaacagcaatcaggcg
atccagatcgcacagcacgatgctcctgttaaaaccatacactggatcaaagcccccaac
tacagctgtgtgatgaccgggagctgggataagactctgaagttctgggacaccaggtcg
tcaaaccccatgatggttttgcaactccctgagaggtgttactgtgctgatgtgatatac
ccgatggccgtggtggcgacagcggagaggggcctgattgtctatcagttggagaaccag
ccgtccgagttcaggaggatagaatccccgctgaaacatcagcatcggtgtgtggctatt
tttaaagacaaacagaacaagccaactggatttgctctcggaagcattgaggggagagtc
gccattcactacatcaatcctccaaatcctgccaaggataacttcacctttaaatgccat
cgatccaatgggaccaacacttctgcccctcaagacatctatgcggtcaacggcatcgcc
ttccacccggtgcacggcaccctggccaccgtggggtctgatggccgcttcagcttctgg
gacaaagatgccagaacaaaactcaaaacttcagagcagttagatcagccgatagcagcc
tgctgcttcaaccacaacgggaacatatttgcgtatgcctccagctacgactggtccaag
ggacatgaattttataatcctcaaaagaaaaactacattttcctgcggaatgcagctgaa
gaactgaagcccaggaataagaagtag

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