Ochotona curzoniae (black-lipped pika): 121161784
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Entry
121161784 CDS
T11174
Symbol
SKIV2L
Name
(RefSeq) helicase SKI2W isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121161784 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocz03019
]
121161784 (SKIV2L)
Enzymes [BR:
ocz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121161784 (SKIV2L)
Messenger RNA biogenesis [BR:
ocz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121161784 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
121161784 (SKIV2L)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
Ski2_N
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
nSTAND3
Motif
Other DBs
NCBI-GeneID:
121161784
NCBI-ProteinID:
XP_040844334
LinkDB
All DBs
Position
Unknown
AA seq
1246 aa
AA seq
DB search
MMETERLVLPPLDPLDLPLRAVELGCTGRWELLNAPGAPESTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKTDPWSLLTALGAPVPSDLQAQRHPTTGQILDYKEVL
LENTNLSATTSLSLRRPPGPVSQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEDIDFE
KDLLTVPPGFKKGIDFAPKDHPAPAAGLLSLSRLLEPLDLGVGDEDESETVGQPGGPPGD
AGSASSCSAPLARASSLEDLVMKEASTAVSLPVPPKPPPQEQWAIPVDVTSPVGDFYRLI
PQPAFQWAFEPDVFQKQAILHLEQHNSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRARAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQTLDELSKQLGALEEPDVTGQLVDLPEYYSWGEELTEIRNMIQRRIMESVSGLKSLS
VGRVVVVKNQEHHSALGVILQVSSNSSSRVFTTLVLCDKPTSQEPQDRGPAPPDVPYPDD
LVGFKLFLPEGPCDHTVAKLHSGDIAAITTKVLRVNGEKILEDFSRRQQPKFKKDPPLAA
VTTAVQELLRLAQAYPAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIQGAQCVHSPRF
PAQYLKLHERTQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEVGTVKLAGRV
ACAMSSHELLLTELLFDNALSALRPEEIAALLSGLVCQSPGDPGDQLPNTLKQGMERVQS
VAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacagagcgtctagtgctgcctcccttagatccgctggacctgccccttcgg
gccgtggaactgggatgcactgggcgttgggagctgctgaacgcgcctggagctccagag
agcaccctcccccatggcctccctccctgtgccccagatctgcagcaggaggcggagcag
ttgtttctgtcctccccagcctggctgcctctgcacggtgtggaacactcagcccgaaaa
tggcagaggaagacagatccttggtctctcctgactgctctgggagcccccgtcccgtct
gacctacaggcgcaaagacatccaaccacaggccagatcctggactacaaggaggtcctg
ctggaaaatacgaatctgtcagccaccacatccttgtctcttcgccggccaccggggccc
gtctcccagtccctatgggggaatccaacgcagtaccccttctggccaggtgggatggat
gagcccaccataacagatctgagcacccgagaggaggctgaggaggacatagactttgaa
aaagaccttcttactgttccgcctggcttcaagaaaggcatagattttgctcccaaggat
cacccagctccagctgccgggttgctcagcctcagccgtctgctggagcctctcgatttg
ggtgtgggtgatgaagatgagagtgagacggttgggcagccagggggtcccccaggggac
gccgggtcagcctcttcctgcagtgctcccctggcccgagcaagcagcttggaggacctg
gtgatgaaggaagcatccacagctgtatccctgccagtaccccccaaacctccacctcag
gaacagtgggccatccctgtggatgtcacctcccccgttggtgatttctaccgtctcatt
cctcagcctgccttccagtgggcttttgagccagatgtgtttcagaaacaggccatcctg
cacttggaacagcacaactccgtctttgttgcagctcacacctctgccgggaagacagtg
gtggctgaatacgccattgcactggcccagaaacacatgacgcgtaccatctacacttcg
cccatcaaggctctgagcaaccagaagttccgggacttccgaaacacattcggtgatgtg
gggctgcttactggggacgtgcagctgcacccagaggcttcctgcctcatcatgacaaca
gagattcttcgctccatgctctacagcggctcggatgtcatccgggacctggagtgggtc
atctttgatgaggtccactacatcaatgatgccgagcgtggggtcgtgtgggaggaggtg
ctcatcatgctccctgaccacgtctccatcatccttctgagtgccactgtccccaacgcc
ctcgagtttgctgactggattgggcgactgaagcgtcgccagatctacgtgatcagcacc
gttgcccggcctgtgcccctggagcactacctcttcacaggaaatagcccaaagacacag
ggtgagctcttcctgctgctggactcgcgaggagccttccacacacaggggtactatgcc
gctgtggaggccaagaaggagaggatgagcaagcacgcccagaccttcggggccaagcag
cccacacaccagggggggcctgcgcaggaccgtggagtgtatctgtccctcctggcctcc
ctccgcgcccgtgcccagctgcccgtggtggtgttcaccttctcccggggccgttgtgac
gagcaggcctcaggcctcacctctcttgatctcacaacaagttcagagaagagtgagatt
catctcttcctgcagcgctgccttgctcgtcttcgtggctctgaccggcagctgccccag
gtcctgcacatgtctgagctcctgcaccgcggcctgggtgtgcaccacagcgggatcctg
cccatcctcaaggagattgtggagatgctcttcagccgcggcctggtcaaggttctgttt
gccacggagacctttgccatgggcgtcaacatgccagcccggacagtggtgtttgactcc
atgcgcaaacatgatggctccaccttccgggacctgctccccggggagtacgtgcagatg
gctggccgcgcgggccggaggggcctggacccgacgggcaccgtcatcctgctctgcaag
ggccgggtgcctgagatggcagacctgcaccgcatgatgatggggaagccatcccagctg
cagtctcagttccgtctcacgtacaccatgatcctcaacctgctgcgggtggatgccctc
agggtggaggacatgatgaagaggagcttctcagaatttccatcccgcaaggacagcaag
gcccatgaacagactctggatgaactgagcaaacagctgggggccttagaggagcctgac
gtgactggccagctggtagacctgcccgaatattacagctggggggaggaactgacagag
atccggaatatgatccagcggcgcatcatggagtccgtgagtgggctgaaatctctctcg
gtgggacgggtggtggttgtgaagaaccaggagcatcacagtgccctgggtgtgatcctg
caggtctcctccaactccagcagcagagtcttcacaaccttggtcttgtgtgataagccc
acgtcacaggagccgcaggacagagggccagcccctccagatgtgccataccccgatgac
ctcgtgggatttaagctatttctacctgaagggccctgtgaccacactgtggccaagctc
cactcaggagatatagctgccatcaccaccaaggtgctccgggtgaatggggagaagatc
ttggaagacttcagcaggaggcagcaaccgaaattcaagaaggatcctcccctcgcagct
gtgaccactgctgtccaggagctgctgcgtctggctcaggcctacccagcagggccccca
accctggatcctgtaaatgacctacagctcaaggatgtctcagtggtagaaggggggcta
cgggcacgcaagctggaggagctgatccagggggctcagtgtgtgcacagcccccgtttt
cctgcccagtacctgaagctgcacgagcgcacacagatccagaaggagatggagcggcta
cgcttcctgctgtctgaccagtcactgctgctgctccccgaataccaccagcgcgttgag
gtgttgcgcaccctgggttatgtggatgaggtgggcactgtgaagctggcgggccgggtg
gcctgtgccatgagtagccacgagctgctgctcactgagctcctgtttgacaacgccctg
agtgccctgcggccagaggagattgcagcgcttctctctggccttgtctgccagagcccc
ggggaccctggggaccagctccctaatactctgaagcagggtatggaacgtgtccagtct
gtggccaagaggattggtgaggtccaggtggcctgtggcctaaaccagacggtggaggaa
tttgtgggagagctgaattttggactggttgaggttgtgtacgagtgggcccggggcatg
cccttctctgagttggcagggctctctgggacccccgagggcctcgtggtccgctgcatc
cagcgcctggctgaaatgtgtcgttccctgcgtggggcagcccgcctggtaggggagcct
gtgctaggtgctaagatggagacagcagccacgctgcttcggcgggacattgtcttcgca
gccagcctctacacccagtga
DBGET
integrated database retrieval system
