KEGG   Ochotona curzoniae (black-lipped pika): 121161921
Entry
121161921         CDS       T11174                                 
Symbol
LTA
Name
(RefSeq) lymphotoxin-alpha
  KO
K05468  lymphotoxin alpha (TNF superfamily, member 1)
Organism
ocz  Ochotona curzoniae (black-lipped pika)
Pathway
ocz04060  Cytokine-cytokine receptor interaction
ocz04061  Viral protein interaction with cytokine and cytokine receptor
ocz04064  NF-kappa B signaling pathway
ocz04668  TNF signaling pathway
ocz04940  Type I diabetes mellitus
ocz05166  Human T-cell leukemia virus 1 infection
ocz05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ocz00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04064 NF-kappa B signaling pathway
    121161921 (LTA)
   04668 TNF signaling pathway
    121161921 (LTA)
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    121161921 (LTA)
   04061 Viral protein interaction with cytokine and cytokine receptor
    121161921 (LTA)
 09160 Human Diseases
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    121161921 (LTA)
   05168 Herpes simplex virus 1 infection
    121161921 (LTA)
  09167 Endocrine and metabolic disease
   04940 Type I diabetes mellitus
    121161921 (LTA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:ocz04052]
    121161921 (LTA)
Cytokines and neuropeptides [BR:ocz04052]
 Cytokines
  Tumor necrosis fators
   121161921 (LTA)
SSDB
Motif
Pfam: TNF
Other DBs
NCBI-GeneID: 121161921
NCBI-ProteinID: XP_040844526
LinkDB
Position
Unknown
AA seq 196 aa
MTAPGRLYLPLLLGLLLALLPGAQGLPGAGFPSSAARTAHQHVQKRFSHSTLKPAAHLVG
DPNTHDSLRWRANTDRAFLRHGFSLSNNSLLVPVSGLYFVYSQVVFSGEGCSTKTVPNPL
YLAHEVHLFSSQYSFHVPLLSAQKSVCPGPQGPWVRSVYQGAVFLLTKGDQLSTHTDGIS
HLLLSPSTVFFGAFAL
NT seq 591 nt   +upstreamnt  +downstreamnt
atgacagcacctggacgtctctacctccccctccttctggggctactgctagccctgctg
ccaggggcccaggggctcccaggtgctggtttcccgtcctcagctgcccggactgcccat
cagcacgtccagaagcgcttcagccacagcactctcaaacctgctgctcacctcgttgga
gatcccaacacacatgattcgctacgctggagggccaacaccgatcgggcctttctccgc
catggcttctccctgagcaacaactccctcttggtccctgtcagtggactctacttcgtc
tactcccaggtggtcttctccggggagggctgctccaccaagaccgtccccaatcccctc
tacctggcccatgaggtccacctcttctcctcccagtactccttccacgtgcctctcctc
agcgcccagaagtccgtgtgcccagggccacagggcccgtgggtgcgctccgtgtaccag
ggcgccgtgttcctgctcactaagggagaccagctgtccacccacactgacggcatctcc
cacttactcctcagccccagcactgtcttctttggagcttttgctctgtag

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