Ochotona curzoniae (black-lipped pika): 121161950
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Entry
121161950 CDS
T11174
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03013
Nucleocytoplasmic transport
ocz03015
mRNA surveillance pathway
ocz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121161950 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
121161950 (DDX39B)
03015 mRNA surveillance pathway
121161950 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocz03019
]
121161950 (DDX39B)
03041 Spliceosome [BR:
ocz03041
]
121161950 (DDX39B)
Enzymes [BR:
ocz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121161950 (DDX39B)
Messenger RNA biogenesis [BR:
ocz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121161950 (DDX39B)
Spliceosome [BR:
ocz03041
]
Complex C
Other components
EJC/TREX
121161950 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121161950 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121161950
NCBI-ProteinID:
XP_040844612
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEEDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaacgacgtggacaatgagctgttggactatgaagaggatgaggtggagacg
gcagctgggggagatggggctgaggcccctgccaagaaggacgtcaagggctcctacgtc
tccatccacagctctggcttccgcgacttcctgctcaagccagagttgcttcgtgccata
gtggattgtgggtttgagcatccatcagaagtgcaacacgagtgcatccctcaggccatt
ctcggaatggatgtcctgtgccaggccaagtcaggcatgggaaagacggcagtgtttgtg
ttggccactctgcaacagctggagccggttactgggcaggtgtctgtgctggtgatgtgt
cacactagagaactggcttttcagattagcaaggaatatgagcgcttctctaaatatatg
cccaatgtcaaggtcgcggtgttttttggaggtctgtccatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatattgtcgtggggactcctggccggatcctagctctggca
cgaaataagagcctcaacctgaaacacattaaacattttatcttggatgaatgtgataag
atgcttgaacaactcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccac
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgcccagtctgccgc
aagttcatgcaagatccaatggagatcttcgtggatgatgagacgaagttgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctagatgtccttgagttcaaccaggtggtgatctttgtgaagtctgtgcagcggtgc
attgccctggcccagctcctagtggagcagaacttcccagccattgccatccaccgtggg
atgccccaggaggaaaggctttctcggtatcagcagtttaaagattttcaacgacgaatt
cttgtggctaccaacctgtttggtcgaggtatggacatagagcgggtgaacatcgccttt
aactatgacatgcctgaggattctgacacctacctgcatcgggtggccagagcaggccgg
ttcggtaccaagggtttagccatcacgtttgtgtcagacgagaatgatgcaaaaatcctc
aatgacgtacaggatcgatttgaagtcaacattagtgagctgcctgatgagatagacatc
tcctcctacattgaacagacacggtag
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