Ochotona curzoniae (black-lipped pika): 121161990
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Entry
121161990 CDS
T11174
Symbol
SCN8A
Name
(RefSeq) sodium channel protein type 8 subunit alpha isoform X1
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
121161990 (SCN8A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocz04040
]
121161990 (SCN8A)
Ion channels [BR:
ocz04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
121161990 (SCN8A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
IQ
GPHH
Lustrin_cystein
HB_ELP1
Motif
Other DBs
NCBI-GeneID:
121161990
NCBI-ProteinID:
XP_040844671
LinkDB
All DBs
Position
Unknown
AA seq
1991 aa
AA seq
DB search
MAARLLAPPGPDSFKPFTPESLANIERRIAESKLKKPPKADGSHREDDEDSKPKPNSDLE
AGKSLPFIYGDIPQGLVAVPLEDFDPYYLTQKTFVVLNRGKTLFRFSATPALYILSPFNL
IRRIAIKILIHSVFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKIIAR
GFCIDGFTFLRDPWNWLDFSVIMMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTI
VGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVVWPINFNESYLENGTKGF
DWEEYINNKTNFYIVPGMLEPLLCGNSSDAGQCPEGYQCMKAGRNPNYGYTSFDTFSWAF
LALFRLMTQDYWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQA
TLEEAEQKEAEFKAMLEQLKKQQEEAQAAAMATSAGTVSEDAIEEEGEDGVGSPRSSSEI
SKLSSKSAKERRNRRKKRKQKELSEGEEKGDPEKVFKSESEDGMRRKGFRLPDNRIGRKF
SIMNQSLLSIPGSPFLSRHNSKSSIFSFRGPGRFRDPGSENEFADDEHSTVEESEGRRDS
LFIPIRARERRSSYSGYSGYSQGSRSSRIFPSLRRSIKRNSTVDCNGVVSLIGGPGSHLG
GRLLPEVKIDKAATDDSATTEIEIKKKGPGSLLVSMDQLASYGRKDRINSIMSVVTNTLV
EELEESQRKCPPCWYKFANTFLIWECHPYWIKLKEIVNLIVMDPFVDLAITICIVLNTLF
MAMEHHPMTPQFEHVLAVGNLVFTGIFTAEMFLKLIAMDPYYYFQEGWNIFDGFIVSLSL
MELGLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIF
AVVGMQLFGKSYKECVCKINQDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAG
QAMCLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDGEMNNLQISVIRIKKGVA
WIKVKVRAFMQAHFKQREADEVKPLDELYEKKANCIANHTGADIHRNGDFQKNGNGTTSG
IGSSVEKYIIDEDHMSFINNPNLTVRVPIAVGESDFENLNTEDVSSESDPEGSKDKLDDT
SSSEGSTIDIKPEVEEVPVEQPEEYLDPDACFTEGCVQRFKCCQVNIEEGLGKSWWILRK
TCFLIVEHNWFETFIIFMILLSSGALAFEDIYIEQRKTIRTILEYADKVFTYIFILEMLL
KWTAYGFVKFFTNAWCWLDFLIVAVSLVSLIANALGYSELGAIKSLRTLRALRPLRALSR
FEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYHYCFNETSEIRFEIEI
VNNKTECEKLMEGNNTEIRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKPD
EQPKYEDNIYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYY
NAMKKLGSKKPQKPIPRPLNKIQGIVFDFVTQQAFDIVIMMLICLNMVTMMVETDTQSKQ
MENILYWINLVFVIFFTCECVLKMFALRHYYFTIGWNIFDFVVVILSIVGMFLADIIEKY
FVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFG
MSNFAYVKHEAGIDDMFNFETFGNSMICLFQITTSAGWDGLLLPILNRPPDCNLEKEHPG
SGFKGDCGNPSVGIFFFVSYIIISFLIVVNMYIAIILENFSVATEESADPLSEDDFETFY
EIWEKFDPDATQFIEYCKLADFADALEHPLRVPKPNTIELIAMDLPMVSGDRIHCLDILF
AFTKRVLGDSGELDILRQQMEERFVASNPSKVSYEPITTTLRRKQEEVSAVVLQRAYRGH
LARRGFIYKKTASNKLENGGPQREKKESTPSTASLPSYDSVTKPEKEKQQRAEEGRRERA
KRQKEVRESKC
NT seq
5976 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgcggctgctcgcaccaccaggccctgacagtttcaagcctttcacccccgag
tcgctggccaacatcgagaggcgcatcgctgagagcaaactcaagaagccacccaaggcc
gacggcagccaccgggaggacgatgaggacagcaagcccaagcccaacagcgacctggag
gcggggaagagcttgcctttcatctacggggacatcccccaaggcctggttgccgtgccc
ctggaggactttgacccttactatttgacgcagaaaacctttgtagtattaaacagagga
aaaactctcttcagatttagtgccacgcctgccttgtacattttaagcccttttaacctg
ataagaagaatagctattaaaattttgatacattcagtgtttagcatgatcattatgtgc
actattttgaccaactgtgtattcatgacttttagtaaccctcctgaatggtccaagaac
gtggagtacacgttcacagggatttacacgtttgagtcactagtgaagatcatcgccaga
ggcttctgcatcgacggcttcaccttcttacgggatccgtggaactggctggacttcagc
gtcatcatgatggcatatgtgacagagtttgtggacctgggcaatgtctcagcgctgaga
acattcagggttctccgagctttgaaaactatctctgtaattccaggcttgaagaccatc
gtgggcgctctcatccagtccgtgaagaagctgtcagacgtgatgatccttacggtgttc
tgcctcagtgtgttcgccttgatcggccttcagctgttcatgggcaacctgcgcaacaag
tgcgtcgtgtggcccatcaacttcaacgagagctacctggagaacggcacgaaaggcttc
gactgggaagagtatatcaataacaagacaaatttttacatagtgcctggcatgctggag
cctttactctgcgggaacagttccgatgctgggcaatgcccggagggataccagtgcatg
aaggcggggaggaaccccaactatggctacacgagcttcgacaccttcagctgggccttc
ctggcgttgtttcgcctaatgacccaggactattgggaaaacttgtatcagctgactctg
cgagcagctgggaaaacctacatgatcttctttgtcctggtcatctttgtgggttctttc
tacctggtgaacttgatcttggctgtggtggccatggcctacgaagaacagaatcaggcc
acattggaggaggcagagcagaaagaggctgagttcaaagccatgttggagcaacttaag
aagcagcaggaggaagcacaggctgctgccatggccacctcagcagggaccgtgtcggaa
gatgccatcgaggaggaaggggaagacggggtcggctctccccggagctcatctgagatt
tccaaactcagttccaagagcgccaaggaacggcggaaccggcggaagaagaggaagcag
aaggagctgtcagaaggagaggagaaaggggatcccgagaaggtgttcaagtccgagtcc
gaagacgggatgaggagaaagggcttccgcctgccagacaacaggatagggaggaagttc
tccatcatgaatcagtcactgctcagcatcccaggctcgcccttcctctcccgccacaat
agcaaaagcagcatcttcagcttccgtggtcccgggcgcttccgagaccctggctccgag
aacgagttcgcagatgacgagcacagtacagtggaggaaagcgaaggccggcgggactca
ctcttcatcccgattcgggcacgtgagcgccgcagcagctacagtggatacagcggatac
agccagggcagccgctcgtctcgcatcttccccagcctgcggcgcagcatcaaacgcaac
agcacggtggattgcaatggagtggtgtccctcatcggtggccccggctcccacctcggc
ggccggctcctgccagaggtgaaaatagataaggcagctaccgatgacagtgctaccact
gagatagaaattaagaagaaaggccccggatctcttttagtctccatggaccaactggcc
tcctatgggcggaaggacagaatcaacagtataatgagtgttgttacaaatactctggtg
gaagagctggaagagtctcagagaaaatgcccaccctgctggtataaatttgccaacact
ttcctcatctgggaatgtcacccttactggataaagctgaaagagattgtcaacttgata
gtcatggacccttttgtggatttagccatcaccatctgcattgtcctgaatacgctgttc
atggcaatggagcaccatccgatgacaccgcagttcgaacacgtcttggccgtaggaaat
ctggttttcactggcattttcacagcagagatgttcctgaagctgatagccatggaccct
tactattatttccaagaaggttggaacatttttgacggctttatcgtctccctcagctta
atggaactgggtctagcagacgtggaagggctctcggtgctgcgatccttccgattgctc
cgagtcttcaagttggccaagtcctggcccaccctgaacatgttgatcaagattattgga
aactcagtgggtgccctgggcaacctgaccctggtgctggccatcatcgtcttcatcttc
gccgtggtcgggatgcagctctttgggaagagctacaaagaatgtgtctgcaagatcaac
caggactgtgaactccctcgctggcacatgcacgacttcttccactccttcctcattgtc
tttcgagtactgtgcggggagtggattgagaccatgtgggactgcatggaggtggccggc
caggccatgtgcctcattgtctttatgatggtcatggtgattggcaacttggtggtgctg
aacctcttcctggccttgctgctgagctccttcagcgccgacaacctggccgccacggac
gacgacggggagatgaacaacctgcagatctccgtgatccgcatcaagaagggcgtggcc
tggatcaaagtcaaggtgcgggccttcatgcaggcacacttcaagcagcgggaggcggac
gaagtcaagcccctggatgagctctatgagaagaaggccaactgcatcgccaaccacacc
ggggccgacatccaccgcaacggtgacttccagaagaacggcaacggcaccaccagcggc
atcggcagcagtgtggagaagtacatcattgacgaggaccacatgtccttcatcaacaac
cccaacctcacggtgcgcgtgcccatcgctgtgggcgagtccgacttcgagaacctcaac
accgaggacgtcagcagcgagtcggaccccgaaggcagcaaagataaactggacgacacc
agctcctcagagggtagcaccattgacatcaagcccgaggtggaggaggtacctgtggag
cagcccgaggagtacttggacccagacgcctgctttactgaagggtgcgtccagcggttc
aagtgctgccaggtgaacatcgaggaaggactaggcaaatcctggtggatcttgcgaaag
acttgcttcctcatcgtagaacacaactggtttgagaccttcatcatcttcatgatcctg
cttagcagcggtgccttggcttttgaggatatctacattgaacagagaaagaccatccgc
accatcctggagtatgccgacaaggtcttcacctacatctttatcctggagatgctgctc
aagtggacggcctacggcttcgtcaaattcttcaccaacgcctggtgctggttggacttc
ctcatcgtggctgtctctttagtcagccttatagctaatgccctgggctactcggaacta
ggtgccataaagtcccttaggaccctaagagctttgaggcctttaagagccttatcacga
tttgaagggatgagggtggtggtgaatgccttggtgggcgccatcccctccatcatgaat
gtgctgctggtgtgtctcatcttctggctgattttcagcatcatgggagttaacctgttt
gcgggaaagtaccactactgcttcaacgagacctccgagatccgcttcgaaattgagatt
gtcaacaacaaaaccgagtgtgagaaactcatggaggggaacaacacggagatcagatgg
aagaatgtgaaaatcaattttgacaatgtcggggcaggctacctggctctgcttcaagtg
gcaaccttcaaaggctggatggacatcatgtatgcagccgtggactcccgcaagcctgat
gagcagcctaaatatgaggataacatctacatgtacatctactttgtcatcttcatcatc
ttcggctccttcttcaccctgaacctgttcattggtgtcatcatcgataacttcaatcaa
caaaagaaaaagtttggaggtcaggacatcttcatgacggaggaacagaagaagtactac
aacgccatgaagaagctgggctccaagaagccccagaagcccatcccccgcccactgaac
aagatccagggcattgtgttcgactttgtgacgcagcaagcttttgacattgtcatcatg
atgctcatctgccttaacatggtgacgatgatggtggagacggacacacagagcaagcag
atggagaacatcctctactggatcaacctggtcttcgtcatcttcttcacctgcgagtgt
gtgctcaagatgttcgccctgaggcactactacttcaccatcggctggaacatcttcgac
ttcgtggtggtcatcctgtccattgtgggaatgttcctggcggacatcatcgaaaagtac
tttgtttctcccaccctcttccgagtcatccggttggcccgaatcgggcgcatcttgcgt
ctgatcaagggcgccaagggaatccgcactctgctctttgccttaatgatgtccttgccg
gccctgttcaacatcggcctcctgctcttcctggtcatgttcatcttctccatcttcggc
atgtccaacttcgcctacgtgaagcacgaggccggcatcgacgacatgttcaacttcgag
acgttcggcaacagtatgatctgcctgtttcagatcaccacgtcggccggctgggacggc
ctgctgctgcccatcctcaaccggccgcccgactgcaacctggagaaggagcacccgggc
agcggcttcaagggggactgcgggaacccgtccgtgggcatcttcttcttcgtgagctac
atcatcatctccttcctcatcgtggtcaacatgtacatcgccatcatcctggagaacttc
agcgtggccacggaggagagcgccgaccccctgagcgaggacgacttcgagaccttctac
gagatctgggagaagttcgaccccgacgccacgcagttcatcgagtactgtaagctggcg
gacttcgccgacgcgctggagcacccgctgcgggtgcccaagcccaacaccatcgagctc
atcgccatggacctgcccatggtgagcggggaccgcatccactgcctggacattctcttc
gccttcaccaagcgggtcctgggggacagtggggagctggacatcctgaggcagcagatg
gaggaacggttcgtggcgtccaacccttccaaagtgtcttacgagcccatcacgaccacg
ctgcggcgcaagcaggaggaggtgtcggccgtggtcctgcagcgcgcctaccgcggacac
ctggcacggcggggcttcatctacaaaaagacggcttccaacaagctggagaacggaggc
ccgcagcgggagaagaaggagagcacgccctccacggcctcgctcccgtcctacgacagc
gtgaccaaacccgagaaggagaagcagcagcgggccgaggaaggcaggagggaaagagcc
aaaagacagaaagaggtccgggagtccaaatgttag
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