Ochotona curzoniae (black-lipped pika): 121162081
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Entry
121162081 CDS
T11174
Symbol
SMARCA2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03082
ATP-dependent chromatin remodeling
ocz04714
Thermogenesis
ocz05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121162081 (SMARCA2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
121162081 (SMARCA2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
121162081 (SMARCA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocz03021
]
121162081 (SMARCA2)
03036 Chromosome and associated proteins [BR:
ocz03036
]
121162081 (SMARCA2)
Transcription machinery [BR:
ocz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121162081 (SMARCA2)
Chromosome and associated proteins [BR:
ocz03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
121162081 (SMARCA2)
Chromatin remodeling factors
BAF complex
121162081 (SMARCA2)
PBAF complex
121162081 (SMARCA2)
GBAF(ncBAF) complex
121162081 (SMARCA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
121162081
NCBI-ProteinID:
XP_040844841
LinkDB
All DBs
Position
Unknown
AA seq
1587 aa
AA seq
DB search
MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPAL
GSTDFPQEGMHQMHKPIDSIHDKGIVDDMHCGSMKGTSMRTPHPGMGPPQSPMDQHSQGY
MSPHPSPMGAPEHVSSPVSGGGPTPPQMPPGQPGSLIQGEPQAMSQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQQQQQQQQQQQQQQQQQQQQPQ
PTPTQPQSQQPQQPLTYPNRIGGPSQDLNSLGTPQKLQALSGRPSPAPTAAAQPPAAAVP
GPSVQPPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELEN
LPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTL
REARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATW
HANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNL
VWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETG
KVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESESDYEEEDEEEESSRQETEEKILLD
PNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGT
LKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLS
TLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKI
RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF
KSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVE
YVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ
HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIME
DYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVI
FDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGM
FDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRRE
DARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEK
QWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNPPKL
TRQMNAIIDTVINYKDRCNAEKVPGNFQLEIEGSSSGRQLSEVFIQLPSRKELPEYYELI
RKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCQNAQTFNLEGSQIYEDSIVLQSVFKSAR
QKIAKEEESEEESNEEEEEEEEEESESEAKSVKVKIKLNKKDEKSRDKGKAKKRPNRGKA
KPVVSDFDSDEELDDNEQSEASGTDDE
NT seq
4764 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgcccacagaccctggcgccatgccccatccggggccctcaccggggcctgga
ccctcccccggaccaattctcggaccaagtccaggaccaggaccatccccgggttccgtc
cacagcatgatggggccaagtcccggccctccgagtgtctcacatccgatgccagccttg
gggtctacagacttcccacaagaaggcatgcatcagatgcataagcccatcgacagtatt
cacgacaaagggattgtggacgacatgcactgtggatccatgaagggcacaagtatgcga
actccccatccgggcatgggccctccccagagccccatggatcagcacagtcaaggttac
atgtcaccgcacccatctcccatgggagccccagaacatgtctccagtcccgtatccgga
ggaggcccgacaccaccgcagatgccaccgggccagccaggatccctcattcagggtgaa
ccacaggccatgagccagcccaacagaggaccgtcgcctttcagccccgtgcagctgcat
cagctgcgagcacagattctagcatacaaaatgctggcccggggccagcccctccccgaa
accctgcagcttgcagtccaggggaaacggacattgcctggcatgcagcaacagcagcag
caacaacagcagcagcaacagcagcagcagcaacagcagcagcaacagcagcaaccacag
ccaacaccaacgcagccacagtcacagcagccgcagcagccgctcacatatcccaacaga
ataggtggcccatcccaggacctgaacagtctgggcaccccacagaagcttcaggcactc
agcggccggccctctccggcacctacagctgcagcacagcctcctgcggctgccgtgccc
ggcccatcggtgcagcctccagcgccggggcagccctcacctgtcctgcagctgcagcag
aagcagagccgcatcagccccatccagaagccacagggcctggaccccgtggagatcctg
caggagcgcgagtacaggcttcaggcccgcatagctcacaggatacaagaactggaaaat
ctgcctggctctctgccaccagatttacgaaccaaagctactgtggagctgaaagcactc
cggctactcaatttccagcgtcagctgcgacaggaggtggtggcctgcatgcgcagggac
acgaccctcgagacggccctcaactccaaagcgtacaagcgcagcaagcggcagacgctg
agagaggctcgcatgaccgagaaactagaaaaacagcagaagatcgagcaggagaggaag
cgccggcagaagcaccaggaatacctgaacagcattttgcaacatgcgaaagactttaag
gaataccaccgctccgtggctggcaagatccagaagctgtccaaagccgtggcgacgtgg
cacgccaacacggaaagggaacagaagaaggagacagagcgtatcgagaaggagagaatg
cggagactgatggctgaagatgaagaagggtacagaaagctgattgaccaaaagaaggac
agacgcttggcttacctcctacagcagaccgacgagtacgtggccaatctgaccaacctg
gtgtgggagcacaagcaagctcaagcagccaaagaaaagaagaagaggaggaggaggaag
aagaaagctgaagagaacgcagagggaggcgagtcggccctaggaccagacggagagccg
atagatgagagcagtcagatgagtgacctccctgttaaagtgacacacacggaaaccggc
aaggtcctctttggaccagaagcacccaaagcaagccagctggatgcctggttggaaatg
aatcctggttacgaagtggccccaagatcggacagtgaggagagtgaatccgattatgag
gaggaggatgaggaagaagagtccagcagacaggaaacggaagagaaaattctcctggac
cccaacagtgaggaagtctctgagaaggatgccaagcagattattgagaccgcgaagcaa
gacgtggatgatgaatacagcatgcagtacagcgcccgagggtcacagtcgtactacaca
gtggctcacgccatctcggagagggtggagaagcagtcggctctgctcattaacggaacc
ctgaagcattaccagctgcagggcctggaatggatggtctccctgtataataacaatctg
aacggaatcttagccgatgaaatggggctaggaaagaccatacagaccattgcactcatc
acgtatctgatggagcacaaaagactcaatggcccctatctcatcatcgttcccctctcg
actctatctaactggacatatgaatttgacaaatgggctccttctgtggtgaaaatttct
tacaagggcacccctgccatgcgtcgctctctggtgccccagctgcggagtggcaaattc
aatgtcctcctgactacttatgagtacattataaaagacaagcacattcttgcaaagatt
cggtggaagtacatgatcgtggacgaaggccaccgaatgaagaaccaccactgcaagctg
acccaagtcttgaacacgcactacgtggcccccagaaggatcctgttgaccggcaccccg
ctacagaacaagctccccgaactctgggccctcctcaacttcctcctccccacgattttt
aagagttgcagcaccttcgaacaatggtttaacgctccgtttgccatgacgggtgaaagg
gtggacctgaatgaagaggagaccatcttgatcattaggcgtctacataaagtgctgagg
ccattcctactgaggagactcaagaaagaagtggaatcccagcttccagaaaaagtggaa
tacgtgatcaagtgcgacatgtcggccctgcagaagatcctctaccgacacatgcaggcc
aaggggatcctcctcacagatggatctgagaaagataagaaggggaaaggaggagccaag
actctgatgaacaccatcatgcagctgagaaagatctgcaatcacccctacatgttccag
catattgaggaatcctttgctgaacacctgggctattccaacggagtcataaatggggcc
gagctataccgggcctcaggcaagtttgagctcctggatcgtatcctgcccaaactgcga
gcgaccaatcaccgcgtgctgcttttctgccagatgacctcgctcatgaccatcatggag
gactatttcgcctttcgcaacttcctttacctacgcctggacggcaccaccaagtctgaa
gatcgtgctgcgctgctgaagaaattcaatgagcctgggtcccagtatttcatcttcctg
ctgagcacccgcgcgggaggcctgggtttaaacctgcaggcagctgacacggtggtcatc
tttgacagtgactggaaccctcaccaggacttgcaggcacaggaccgagcccaccgcatt
ggccagcagaacgaggtccgggtgctgcgactgtgtaccgtcaacagcgtggaagagaag
atcctggcagcggccaagtacaagctgaacgtcgaccagaaggtcatccaggcgggcatg
ttcgatcagaagtcctccagccacgagcgcagggccttcctgcaggccatcctggagcac
gaagaggagaacgaggaggaagatgaagtgccagatgacgagactctgaaccagatgatc
gcccggcgagaggaggaattcgacctttttatgcgtatggacatggaccggcggagggaa
gatgctcggaaccccaaacgcaagccccgcttgatggaggaggacgagctgccctcctgg
attataaaggacgatgccgaagtggaaaggctcacgtgtgaagaggaagaggagaagata
ttcggcaggggttctcgccagcgccgcgacgtggactacagcgatgccctcacggagaag
cagtggctcagggccattgaagacggcaacttagaggaaatggaggaggaagtacggctg
aaaaagagaaagaggcgaagaaacgtggacaaggaccccgccaaggaagacgtggaaaag
gctaaaaagagacggggccgccccccagccgagaagctctcgcccaatcccccgaaactg
accagacagatgaacgccatcatcgacacggtcatcaactacaaggacaggtgtaacgcg
gagaaggtgcccggtaattttcagttggaaatagaaggaagcagctccggtcggcagctc
agcgaggtcttcatccaattaccttcaaggaaagaattgccagaatactatgaattaatt
aggaaaccagtggacttcaaaaaaataaaggaaagaatccgtaaccataagtaccggagc
ctgggcgacctggagaaagatgtcatgctgctgtgtcagaacgctcagacgttcaacctg
gagggctctcagatctatgaagactccatcgtcttacagtccgtgtttaagagcgctcgg
cagaaaattgccaaagaggaggagagcgaggaggagagcaatgaagaggaggaagaggag
gaagaggaggagtcggagtcggaagccaaatcggtgaaggtgaaaatcaagctcaacaaa
aaagatgagaaaagccgagacaaaggcaaagcgaagaaaaggccaaatcgaggcaaagcc
aaacctgtcgtgagcgacttcgacagcgatgaggagctggatgacaacgaacagtcggaa
gcgagtgggacagatgatgaatga
DBGET
integrated database retrieval system
