Ochotona curzoniae (black-lipped pika): 121162469
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Entry
121162469 CDS
T11174
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ocz
Ochotona curzoniae (black-lipped pika)
Pathway
ocz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121162469 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocz03041
]
121162469 (DDX42)
Enzymes [BR:
ocz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121162469 (DDX42)
Spliceosome [BR:
ocz03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121162469 (DDX42)
Complex B
121162469 (DDX42)
Complex C
U2 SnRNP specific factors
121162469 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
121162469
NCBI-ProteinID:
XP_040845405
LinkDB
All DBs
Position
Unknown
AA seq
940 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAAPQLPSFY
KIGSRRANFDEENAYFEDEEEDSTNVDLPYIPAENSPTRQQFHSKPMDSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITSLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSTAGASGWTSAGSLNSVPTNSAQQGPSGPDSPVTNSKGVPGFGSTGNASNAPVSYP
SAGAQGVNNTASGSNSREGTGSGNGKRERYTENRGGSRHSHGESSSRHGDGPRHGDGGRH
GDGYRYPESSSRHTDGHWHGENRHGGGAGRHGESRGASDGRNGESRKEGCNRESKTDPKA
DSSKMDKMDKTDKTDSKSDKTADGFAVPEPPKRKKSRWDS
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggcacgaagcggggatttggcttcggaggtttcgcc
atcagtgctgggaagaaggaggagcccaaactcccgcagcagtcccacagtgccttcggg
gcaaccagctcttcctcagggtttggaaagtcggctgcgccccagctcccttctttctac
aaaattggatctagacgggccaactttgatgaggaaaatgcatattttgaagatgaggaa
gaagactccaccaatgttgacttaccttacattcctgctgaaaactccccgacccgccag
cagttccattccaagcccatggattccgacagtgatgatgacccgctggaggcgttcatg
gctgaagtggaggatcaggcagctagagacatgaagagacttgaagataaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttac
ttccgatacatggcagaaaacccaactgctggtgtggttcaggaagaggaggaagacaac
ttggaatacgatagcgatggaaatccaattgcaccttccaagaaaatcattgatcctctt
cctcctattgatcattcagagattgactatccaccatttgaaaaaaatttttataatgag
catgaggagataaccagcctcactccgcaacagttaatagatctccggcataagctcaat
cttcgggtctctggtgctgcacctcctagaccaggaagtagctttgctcactttgggttt
gatgaacaactgatgcaccagattcgaaaatctgagtatacccagcccactccaatacag
tgccagggtgtgcctgtggcattaagtggtagagacatgattggcattgctaaaacaggc
agtgggaaaactgcagcattcatatggcccatgctgattcacataatggaccagaaggag
ttggagccaggggatggaccaattgctgtcattgtgtgtcctaccagggagctttgccag
cagatccatgcagaatgtaagcggtttgggaaagcatataaccttcgatcagtggccgtg
tatggaggagggagcatgtgggaacaggccaaggcccttcaggaaggggcagagattgtt
gtgtgcaccccaggccgactgattgatcatgtgaagaagaaagctaccaatcttcaaaga
gtctcttaccttgtgtttgatgaagcagatcgaatgtttgacatgggttttgagtaccag
gttcgatccatagcaagtcatgtccgtcctgacaggcagaccctcttattcagtgcaact
tttcggaaaaagattgaaaaattggcccgggacatcctgattgatcctattcgagtggtc
cagggagatattggagaggcaaatgaagatgtgacacagattgtggagattctccactct
gggcccagtaaatggaactggcttacgcggcgactggtagagttcacctcttcggggagt
gtcctcttgtttgttactaaaaaagcaaatgctgaagagctggccaataatcttaagcag
gagggtcataatcttgggttgctccatggggacatggatcagagtgagagaaacaaagtg
atttcagacttcaagaagaaggacatcccagtcctggtggccacagatgttgcagcccgg
ggtctggacatcccttcaattaagactgttattaactatgatgtggcacgagacattgat
acccatactcacaggattggccgcacaggaagagcgggtgagaaaggtgtggcctatacc
ttactgacccccaaggacagcaattttgctggtgaccttgtccgaaacttggaaggagca
aatcagcatgtttccaaggaactcctagatctggcaatgcagaatgcctggtttcggaaa
tctcgcttcaaaggagggaaaggcaaaaagctcaacattggtggaggaggcctaggctac
cgggagcggcctggcctgggctccgagaactcggaccgaggaaataacaacaatgtcatg
agcaattatgaggcctataaaccctccacaggagcgatgggagaccggctgacggcaatg
aaggcagctttccagtcacagtataagagtcactttgtggcagccagcttaagcaatcag
aaggcaggaagctctactgctggggcaagtggatggactagtgcagggagcttgaattcc
gttcccactaattcagcacaacagggccccagtggtcccgacagccccgtcaccaattcc
aaaggtgtcccaggctttggcagtactgggaatgccagcaacgcccctgtgtcgtaccct
tctgctggagcccaaggagtcaacaatacagcttcaggaagtaacagccgagaagggaca
gggagtggcaatgggaagagagaaagatacaccgagaaccggggtggcagcagacacagt
catggagagagcagcagtcggcatggagatggccctcgtcatggagatggtggtcgtcac
ggagatggatatcgctacccagaaagcagcagtcgtcatactgatggccattggcatggg
gagaacaggcatggaggaggtgcaggccggcatggggagagccggggtgcaagtgatggt
cggaatggggaaagcaggaaggaaggttgtaatcgtgagagcaagacggaccccaaagcg
gacagcagcaagatggacaagatggacaagacagacaagacggacagcaagtcagataag
acagcggatggttttgctgtcccagagccacccaaacgcaaaaagagtcgatgggacagt
taa
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integrated database retrieval system
