Ochotona curzoniae (black-lipped pika): 121164364
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Entry
121164364 CDS
T11174
Symbol
TRUB1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
ocz Ochotona curzoniae (black-lipped pika)
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ocz03016
]
121164364 (TRUB1)
Enzymes [BR:
ocz01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
121164364 (TRUB1)
Transfer RNA biogenesis [BR:
ocz03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
121164364 (TRUB1)
Prokaryotic type
121164364 (TRUB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
121164364
NCBI-ProteinID:
XP_040848425
LinkDB
All DBs
Position
Unknown
AA seq
342 aa
AA seq
DB search
MAAGEKEVESALEPGATPDSGTSGTTSAMAATSSAIVAAARTGTEGTVSKGALAAKLLSL
NGVFAVQKPKGPTSAELLNRLKEKLLAEAGMPPRERTKRKKQTLKIGHGGTLDSPAQGVL
VVGIGRGTKMLTNMLSESKRYIAVGELGRATDTLDSTGKVTEEKPYDKITRGDMESILQK
FTGNIMQVPPLYSALKKDGQRLSTLVKRGKIVEAKSARPVTVYGISLQKFQPPFFTLDVE
CGGGFYIRSLVNDIGKELSSCANVLELTRTKQGPFTLEEHALPEDRWTIDAIAQSVEHCS
SLLPTELALKKPKPEESSEKVLSCKSITFSDTKGKDDAIKTF
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggcagctggtgagaaggaggtcgagtcagccttggaaccaggcgcaaccccggattct
ggaacgtcaggaactacctcagccatggccgcgacctcgtcagcgatcgttgcggcggcc
aggaccggaactgaaggcacggtctccaagggcgccttggctgccaagctgctgtccctc
aacggcgtgttcgccgtgcagaaacccaaagggcccacttcagccgagctcctgaaccgg
ctgaaggagaagctgctggcagaagctggaatgcctccccgagaaaggactaagaggaaa
aagcagactttgaagattgggcatggagggactctggacagccccgcccaaggagtgcta
gtggttggaattggaaggggaacaaaaatgctgaccaatatgttgtctgagtctaagagg
tatattgctgttggagaactggggagggccactgacaccctggattctacagggaaagta
acagaagaaaaaccttacgataaaataacacgaggagatatggaaagcattctacagaag
tttactgggaacataatgcaagtacctcccctctattctgcgttaaagaaggatggacaa
agactttcgactttggtgaagagaggaaaaatagtagaagcaaaatcagccaggccagtc
actgtgtacggcatctcccttcagaaattccaaccaccattcttcacattggatgttgaa
tgtggaggaggcttttacatcagaagcttggtcaatgacattggcaaagaattgtcttcc
tgtgccaacgtactagagctgacccgaaccaaacaggggccatttaccctggaagagcac
gcccttcctgaagacaggtggaccattgatgccattgcgcagtctgttgagcattgctca
tctcttctccccacagagttggcccttaaaaaaccaaaacccgaggagtccagtgaaaag
gttttgagctgtaaatctataaccttcagtgacaccaaagggaaagatgatgcaattaaa
acattttga
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