Ochotona curzoniae (black-lipped pika): 121164672
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Entry
121164672 CDS
T11174
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3 isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121164672 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocz03021
]
121164672 (CPSF3)
03019 Messenger RNA biogenesis [BR:
ocz03019
]
121164672 (CPSF3)
Transcription machinery [BR:
ocz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121164672 (CPSF3)
Messenger RNA biogenesis [BR:
ocz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121164672 (CPSF3)
U7-dependent histone pre-mRNA processing factors
121164672 (CPSF3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
121164672
NCBI-ProteinID:
XP_040848740
LinkDB
All DBs
Position
Unknown
AA seq
684 aa
AA seq
DB search
MSSIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
QNEMARLKAALIREYEDNEEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQR
VSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLYYQLQKLTGDVEEI
EIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQK
VPKKLEMHVYSKRLEIMLQDIFGEECVSVKDGSVLSVTVDGKTANIHLETRTVECEEGSE
DDESLREMVELAAQRLYEALTPAH
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgattcctgctgaggagagcgaccagctgctgatccgacccctgggagctgga
caggaagtaggaagatcatgtattattctggagttcaaaggaagaaaaatcatgctggac
tgtgggatccaccccggcctggagggaatggacgctcttccttacatcgacttaatcgac
ccagctgaaattgacctcctgttaatcagtcacttccatctggatcactgtggagctttg
ccgtggttcctgcagaagacaagctttaagggcaggaccttcatgacgcatgcgacgaaa
gcgatttacagatggctgctgtccgactatgtgaaagttagtaacatatcagcagatgac
atgctgtacactgagacagatttggaggaaagcatggacaaaattgaaacgatcaacttt
cacgaagttaaggaagttgcagggatcaagttctggtgttaccacgcgggccacgtcctg
ggagccgccatgttcatgatcgagattgcgggagtgaagctcttatacacaggcgacttc
tccagacaagaagacagacacttaatggcagctgaaattccgaatattaaaccagatatt
cttattattgagtccacttacgggacccacatccacgagaaacgtgaggagcgagaagca
cgcttctgcaacaccgtgcacgacatcgtgaacagaggcggccgagggctcatccctgtc
tttgcactcggaagagcgcaggagctgctcttgattctagatgaatactggcagaatcac
ccagaactgcacgacattcccatatactatgcgtcatcgttggccaagaagtgcatggca
gtgtaccagacctacgtgaacgccatgaatgacaagatccgcaaacagatcaacatcaac
aacccctttgttttcaaacacattagtaatctcaagagcatggaccacttcgacgacatt
ggtcccagtgtggtgatggcgtccccaggcatgatgcagagcggcttgtccagagagctc
tttgagagctggtgcactgataagagaaacggcgtcatcatagcagggtactgtgtggaa
ggaacgctcgccaagcatatcatgtctgaacctgaagaaatcaccaccatgtctggacag
aagttaccgctgaaaatgtctgttgattacatttctttctctgctcacacagattaccaa
caaaccagcgaatttatccgtgctttgaaaccgcctcatgtgattttggtccacggtgag
cagaatgaaatggccaggttgaaggcagcgctgatccgagagtacgaggacaacgaggag
gtgcacatcgaggtgcacaaccctcggaacacggaggccgtgaccctgaacttcagagga
gaaaagcttgctaaggtcatgggctttttggcagacaagaagccagaacagggccagcgg
gtctcaggaatactcgttaagagaaactttaattatcacatcctgtctccttgtgacctg
tccaattacaccgacttggccatgagcactgtgaaacagacccaagctattccctacact
ggcccctttaatttgctctattaccaactacagaaattgacaggtgatgtagaagaaata
gaaattcaagaaaaacctgctctgaaagtgttcaaaaatattactgtaatacaggaacca
ggcatggtggtattagaatggctggccaacccttccaacgacatgtatgcagacacagta
acgacagtcatactggaagtccagtcaaatccaaaaatcaggaaaggtgcagtgcagaag
gtccctaaaaaattggaaatgcacgtttacagcaagaggctggagatcatgctgcaggac
atctttggagaagaatgcgtgagtgtcaaagacggctctgtgctcagcgtcaccgtggac
gggaagacggccaacatccacttggagacgcggacggtggagtgcgaggaaggcagcgag
gacgacgagtcgctgcgggagatggtggagctggcggcccagcggctgtacgaggcgctc
acgccggcgcactga
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integrated database retrieval system
