Ochotona curzoniae (black-lipped pika): 121165174
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Entry
121165174 CDS
T11174
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz01524
Platinum drug resistance
ocz03430
Mismatch repair
ocz05200
Pathways in cancer
ocz05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121165174 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
121165174 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
121165174 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
121165174 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocz03400
]
121165174 (MSH6)
DNA repair and recombination proteins [BR:
ocz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
121165174 (MSH6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
nSTAND_NTPase5
WPP
Motif
Other DBs
NCBI-GeneID:
121165174
NCBI-ProteinID:
XP_040849627
LinkDB
All DBs
Position
Unknown
AA seq
1358 aa
AA seq
DB search
MSRQSTLFSFFPKSPGLSKPPARASREGGDARPGAGASASPGGDAASSEAGGPGRRPAAD
SAAPPRTRSFNGGLRRAAAAPAAAPVSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFI
RQKGKSVRIHVQFFDDTPTRGWVTKRLLKPYTGSKSKDAQKGGHFYSSKPEILRAMQHAD
EALNKDKNKRLELAVCDEPSEPEEEEEMEVAAANTSEKSEEDNVIESEEEMQPKVQGSRR
SSRQIKKRRVISDSESDAGGSDVEFKPDAKEEGSSDEISSGGCDSESEGLDGPIKAAPKR
KRMATGNGSLKRKSSKKEVLSTTKRASGIAAETKSTLSAFSAQNCESQSQASGAADDSGR
PATWYHETLEWLKKEKRRDAYRRRPDHPDFDASTLHVPEDFLNSCTPGMRKWWQIKAQNF
DLVIFYKVGKFYELYHMDALIGVNELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVA
RVEQTETPEMMEARCRKMAHISKHDKVVRREICRIITKGTQTYSVLEGDPSENYSKYLLS
LKEKEADSSGHTRVFGVCFVDASLGKFFLGQFSDDRHCSRLRTLVAHYPPVQVLFEKGNL
SMETKSVLKGSLSSSLQEALIPGSQFWDAGKTLRTLLEEGYFTEKVNADSGVMLPQVLKG
MTSESDSIGLTPGENSELALSALGGCVFYLKKCLIDQELLSMCNFEEYIPLDSNVVSTAR
PGAIFQPSQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERIDSCCTPFGKRLLKHWLCAPL
CNPNAISDRLDAIEDLMAVPEKVSEVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPDSRA
IMYEETTYSKKKIIDFLSALEGFKVMCKIIEIMEDAVSDFKSNLLKQVITLQTKNPAARF
PDLTAELHRWDTAFDHDKARKTGLITPKAGFDSDYDQALADIKENEQSLLEYLEKQRSRI
GCRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLASLINAE
ERRDVSLKDCMRRLFHNFDKNYKDWHSAVECIAVLDVLVCLANYSRGGDGPMCRPVILLP
GEDTLPFLELKGSRHPCITKTFFGDDFIPNNILIGCEEDEENHKAYCVLVTGPNMGGKST
LMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILK
HATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNDAV
RLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKARE
FEKMTQSLRLFREIYLATERPTVDAESLRKLLTLTKEL
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcagagcaccctgttcagcttcttccccaagtctccggggctgagcaagccc
ccggccagggcctcacgcgaaggcggcgatgcccggccaggcgcgggggcctccgcttct
cccggcggcgacgcggcctcgagcgaggctggagggcccgggcgcaggcccgcggcggac
tctgccgcgccaccgaggacgagaagcttcaacggaggactccggagggcggctgcggcg
cccgcggctgcgcctgtcagttgtgacttttcacctggtgacttggtttgggccaagatg
gagggctacccctggtggccttgtctggtgtacaaccacccctttgatggaacattcatc
cgccagaaggggaaatcggttcgtatccatgtacagttttttgatgacaccccaacaaga
ggctgggttaccaagaggctattaaagccgtacacaggttcaaaatcaaaggacgcccag
aagggaggtcatttttatagttcaaagcctgaaatattaagagcaatgcaacacgcagat
gaagccctgaataaagacaaaaataagaggcttgagttggctgtgtgtgatgagccctca
gagccggaagaggaagaagagatggaggtagctgcagctaacacatcagagaagagtgaa
gaagataatgtaattgagagtgaagaggaaatgcagcctaaggtgcaaggatctaggcga
agcagccgccaaataaagaaacgaagggtcatttcagactctgagagtgatgctggtggc
tctgatgtggaattcaagccagacgctaaggaggaagggagcagtgatgaaatcagcagc
ggggggtgtgacagtgaaagtgaaggcctggacggtcccatcaaagctgcacccaagcga
aagagaatggcgacgggcaatgggtctcttaaaaggaaaagttcaaagaaagaagtattg
tcaaccaccaagcgagcatctggcattgcagcagaaaccaagagcactcttagtgctttt
tctgctcagaattgcgaatcccagtcccaggctagcggagcagctgatgacagtggtcgg
cctgctacctggtaccatgaaactttagaatggcttaaaaaggagaagagacgagacgcg
tacaggagacggcctgaccaccctgactttgatgcatccacacttcatgtgcctgaagat
ttccttaattcctgtactcctggcatgaggaagtggtggcagattaaggctcagaacttt
gatcttgtcatcttttataaggtggggaagttttatgaactgtatcatatggatgctctt
attggtgtgaatgaacttgggctggtattcatgaaaggcaactgggcccattctggcttt
cccgaaattgcatttggccgttattcagattccctggtgcagaagggatataaagtagca
cgagttgaacagactgaaaccccagaaatgatggaagcaagatgccgaaagatggcacac
atatctaagcatgataaagtggtcaggagggagatctgtagaatcatcaccaagggtaca
cagacgtacagtgtgctggaaggtgatccttctgaaaactacagtaagtatcttcttagt
ctgaaggaaaaagaagcagattcttctggccacactcgtgtgttcggtgtgtgcttcgtt
gatgcttcattgggaaagtttttcctaggtcagttttcagatgatcgccattgttccaga
ctgaggactctagtggcacactatcctccagtacaggtcttgtttgagaaaggaaatctc
tccatggaaactaagtcagtcctgaagggttcattatcctcttctcttcaggaagctctc
atcccaggctcccaattttgggatgcaggcaaaaccctgaggactctccttgaagaaggg
tattttacagaaaaggtaaacgcggacagcggggtgatgctaccccaggtgcttaagggc
atgacctcagagtctgattccattgggctcacaccaggagagaacagtgagttggccctc
tccgctcttggtggttgtgtcttttacctcaaaaaatgccttattgatcaggagctctta
tcaatgtgtaattttgaagaatatattcctttagactctaatgtggtcagtactgccaga
cctggtgctatctttcagcccagtcagcggatggtgctagacgcagtgaccttaaacaac
ttggagatttttctgaacgggacaaatggctctactgaagggaccctgttagagaggatc
gattcttgctgtactccctttggtaagcggctcctcaagcactggctttgtgccccactc
tgtaaccctaacgctatcagtgatcgtctagatgccatagaagacctcatggctgtgcct
gagaaagtctccgaagttgtagaccttttgaaaaagctcccagatcttgaaaggctgctg
agtaaaatccataatgtcggctctcctctgaagagccagaaccacccagacagcagggcc
ataatgtatgaagaaacgacttacagcaaaaagaagatcattgatttcctttctgctctg
gaaggatttaaagtcatgtgtaaaatcatagagattatggaagatgctgtcagtgacttt
aagtctaacctcctgaagcaggtcattactctgcagaccaaaaatcctgcagcccgcttt
cctgatttgactgcagagctgcaccgatgggacacagcttttgaccacgacaaagcacgc
aagactgggctgattactcctaaagcaggctttgacagtgactatgaccaagctcttgcg
gacataaaagaaaatgaacagagcctcctggaatacttggagaagcagcgcagtcgaatt
ggttgtaggactatagtgtactgggggatcggcaggaatcgttatcagctggaaatccca
gagaacttcactacacgtaacctgccagaagaatatgaattgaaatctaccaagaagggc
tgtaaacgatactggaccaaaactattgagaagaagttggccagtctgatcaatgctgaa
gaacggagagatgtatccttaaaggactgcatgcggcgactcttccataactttgataaa
aactacaaggactggcattctgccgtagagtgcatcgcagtgttggatgtcttagtgtgc
ctggctaactatagtcgagggggtgatggccccatgtgccgcccagtaattctgttgcca
ggagaagacactcttcccttcttagagctcaaaggatcacgccacccctgcattaccaag
acattttttggagacgactttattcctaataacattctgataggctgtgaggaagatgag
gaaaatcacaaagcctattgtgtgcttgttactggaccaaatatgggcggcaagtctacc
ctcatgagacaggctggcctattagctgtaatggcccagatgggttgttatgtacctgct
gaagtgtgtaggctcacaccaattgatagagtgtttactagacttggtgcctcagataga
ataatgtcaggtgaaagcacattttttgttgaactgagtgagacggccagcatacttaag
catgcaacagcacattctctggttcttgtagacgaattaggaagaggtactgcaaccttt
gatgggacagcaatagcaaatgcagttgttaaagaacttgctgaaactattaagtgtcgg
actttgttttctactcactatcattcattagtagaagattattctcaaaatgacgctgtg
cgtctaggacatatggcatgcatggtagaaaatgagtgtgaagaccccagtcaggagact
attacctttctctataaattcattaagggagcttgtcctaagagttatggctttaatgca
gcaaggcttgcaaatcttccagaggaggtcattcaaaagggacatagaaaagcaagagaa
tttgagaaaatgactcagtcactacggttatttagggaaatttacctggctactgagagg
ccaactgtagatgctgaatctctccgtaagttgctgactttgactaaagaattatag
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integrated database retrieval system
