Ochotona curzoniae (black-lipped pika): 121167339
Help
Entry
121167339 CDS
T11174
Symbol
DHX16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121167339 (DHX16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocz03041
]
121167339 (DHX16)
Enzymes [BR:
ocz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121167339 (DHX16)
Spliceosome [BR:
ocz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121167339 (DHX16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
Flavi_DEAD
nSTAND3
ATPase
Cas3-like_C_2
SRP54
Motif
Other DBs
NCBI-GeneID:
121167339
NCBI-ProteinID:
XP_040852729
LinkDB
All DBs
Position
Unknown
AA seq
1045 aa
AA seq
DB search
MATPAGLERWVQEELHSVLGLSERHVAQFLIGTAQRCASAEEFVQRLRDTETLDLGGPAR
DFALRLWSKVPRKAVVEKPARVAEREARALLEKNRSYKLLEDSEESSEEAVGKSGSSLQK
KRKKRKHLRKKRQEEEDEEEEEEASDKDKRKVEGSKAQAEKPESEDEWERTERERLQDLE
ERDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLA
KREREKLEDLEAELADEEFLFGDVELSRHERRELRYKRQVRDLAREYRAAGEQERLEATN
RYHMPQETRGQPARAVDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLV
LEEEETIEFVRATQLQGDKEPATPPPSTQAQQRESIQAVRCSLPVFPFREELLAAIADHQ
ILIIEGETGSGKTTQIPQYLYEEGYTKNGMKIACTQPRRVAAMSVAARVAREMGVKLGNE
VGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLI
KDVARFRPELKVLVASATLDTARFSTFFDDAPIFRIPGRRFPVDIFYTKAPEADYLEACV
VSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQ
ARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSK
ASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLM
HFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYGC
SEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFYLPGGDHLALLNVYTQWAESGYSSQ
WCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYVRVRKAITAGYFYHTARLTR
SGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY
KAKELEDPHSKKMPKTVGKTREELG
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccggccggcctggagcgctgggtgcaggaggagctgcactcggtgctgggg
ctcagcgagcggcatgtggcccagttcctgatcggaaccgcgcagcgctgcgcctcggcc
gaggagttcgtgcagcgcctgcgagacaccgagacgctggacctgggcgggccagcccgg
gacttcgccctgagactgtggagcaaggtcccgcgcaaggctgtggtggaaaaaccagct
cgggtggcagagcgagaggcccgagccctcctggagaagaaccgatcgtacaagctgctg
gaagacagtgaagagagcagcgaggaggctgtgggcaagtctgggagcagcctccagaag
aagcgcaagaaacgcaaacaccttcggaagaaacgccaggaggaggaagacgaggaggag
gaagaagaggcttctgacaaagacaagaggaaggtggaggggagtaaggcgcaggcggag
aagcccgaatccgaggatgagtgggagcggacagagcgtgagcgcctgcaggacctggag
gaacgcgatgcctttgccgagcgggtacggcagcgggacaaggatcgcacccgcaacgtc
ctggagcggtcggacaagaaggcttatgaggaggctcagaaacgcctcaagatggcggag
gaagatcggaaagccatggtgcctgagctacgcaagaaatcccgccgagaatacctggca
aagcgagaacgggagaagctggaagaccttgaagcagagctggcagatgaggagttcctg
ttcggggacgtggaactgagccgccatgagcggcgtgaactcagatacaagcggcaagtg
cgggacctggcccgggagtatcgggctgctggggagcaggagagactggaggccaccaat
cgctaccacatgccccaggagacccgagggcagccagcccgagcagtggatctcgttgag
gaggaatcgggtgcccctggcgaggagcagcggcgctgggaggaggcccgcctgggggca
gcatccctcaagtttggggcccgtgatgcggcctcccaagagcccaagtatcagctggtg
ctagaggaggaggagaccatcgagtttgtccgggccactcaactccagggtgacaaggag
ccggctaccccgccgccttccacccaggctcagcagagggagtccatccaggccgtgcgc
tgcagcctccccgtgttcccgtttcgcgaggagctcctggcagccattgctgaccatcag
atcctcatcattgagggcgagactggctcggggaagacgactcagattccgcagtacctg
tatgaggagggctacacgaagaacggcatgaagattgcctgcacccagccccggagagtg
gcggccatgagcgtggctgctcgggtggcccgggagatgggtgtgaagcttgggaatgag
gttggctatagcatccgctttgaagattgtacgtcggagcgaactgtcctgcgctacatg
acagatgggatgcttctccgggaattcctctctgaaccagatctggcgagttacagcgta
gtgatggtggatgaagctcacgaacggaccctgcacacagacattctctttgggttgatc
aaggatgtcgctcgcttccgaccagagctcaaggttctcgtggcttctgccacactggac
acagcccgattttctaccttctttgatgacgcccccatcttccggattcctggacgcagg
tttcctgttgacatcttctataccaaggctcctgaggctgactacctggaagcctgtgtt
gtgtcagtgctgcagatccacgtgacacagccccctggggatatcctggtattcctgaca
ggacaggaggaaattgaggctgcctgtgagatgctccaggatcgctgccgccgcctgggc
tccaagatccgggagctcctggtgctgcccatttatgccaacctgccctctgacatgcag
gctcgtatcttccagcccacgccccctggggcacgaaaggtggttgtggcaacaaacata
gccgagacatcgctgaccattgagggcatcatttatgtgctggatccagggttctgtaag
caaaagagctacaatccccgcacaggcatggagtccctcactgtcacaccttgtagcaag
gcctcagctaatcagcgagctggccgtgcaggccgtgtagctgcagggaagtgcttccgg
ctgtataccgcctgggcctatcagcatgagcttgaggaaaccacagtgcccgagatccag
aggaccagtttgggcaatgttgtgctgctactcaaaagcttagggattcatgacctcatg
cactttgattttctggatccgccaccatatgagaccctgctgctggctctggagcagctg
tatgctctaggagccctcaatcaccttggggagctcaccacgtctggtcgaaagatggca
gagctgccagtggaccccatgctgtccaaaatgatcttggcctctgagaagtacggctgt
tctgaggagatcctaacagtggctgccatgctctctgttaacaactccatcttctaccga
cccaaagacaaggttgtccatgctgacaatgcccgcgtcaacttctacctccctggtgga
gaccatctggctctgctaaacgtctacacacagtgggctgagagcggctactcttcccag
tggtgctatgaaaactttgtccagttcagatctatgcgccgagccagggatgtgcgggaa
cagctggaagggctcttggaacgtgtggaagttggtctcagttcctgccagggagactat
gtccgtgttcgcaaggccatcaccgctggttacttctaccacacggcacggctgacccgt
agcggctaccgcacagtgaaacagcagcagacagtgttcatccaccccaactcctccctc
ttcgagcaacagccacgttggctgctctatcatgaactggtcttgaccaccaaggagttc
atgagacaggttttggagattgagagcagctggcttctggaagtggctcctcactattat
aaagccaaggagctagaagatccccattctaaaaaaatgccgaaaacagtaggcaagacc
cgagaagaattagggtag
DBGET
integrated database retrieval system
