Ochotona curzoniae (black-lipped pika): 121167923
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Entry
121167923 CDS
T11174
Name
(RefSeq) intraflagellar transport protein 140 homolog
KO
K19672
intraflagellar transport protein 140
Organism
ocz Ochotona curzoniae (black-lipped pika)
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ocz03037
]
121167923
Cilium and associated proteins [BR:
ocz03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
121167923
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR19_1st
ANAPC4_WD40
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_HPS5
WD40_Prp19
WDR55
Beta-prop_WDR90_POC16_2nd
TPR_IFT80_172
Beta-prop_EML
Beta-prop_CAF1B_HIR1
TPR_GEMI5
Clathrin
TPR_COPA_B
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
RNase_HII
tRNA_int_end_N2
WD40
Consortin_N
Motif
Other DBs
NCBI-GeneID:
121167923
NCBI-ProteinID:
XP_040853579
LinkDB
All DBs
Position
Unknown
AA seq
1456 aa
AA seq
DB search
MALYFDHQIDTLEAVGSASHINWHPVQPFLAVAFKSCTSGGSVDIYQEQGQRVPDVRIES
SSRVTLLRWHPARLLLAIGWETGEVTVFNQQDKEQHVVPATHTSDVTVLSWSTSGSCLVS
GDKLGVLLLWRLDQRGRVQGAPLLKHEYGKHLTQCIFRLPPPGEDLVQLAKAAVSGDEKA
LDMFNWRKSSFGSFPKMGSQEGLSLFVSLTDGTVHYVDKKGKTACVASTDGSVQTMFYVE
KRESLVVVTENLLLSLYTVAPAGEAEEVMKVKLSGKTGHPADIILIDDSLLVTALGEPVL
RFWDLGREENYMLSLEEACGFERGENMNCVCYCAAKGLLAAGTDRGRVAMWKKVPGPLSS
LWVEGKDRWAPQSPAELEGNIMQIEWGSRKNLLAVNVVSSVVILQEQALSSHFHQQVAAV
QISPSSLYVSFPSAGTAHSLRTDMHISGVFATKDAVAVWNGKQVVIFEPSGAVLRSAGAF
LCESPVLAVHEESVYTVEPSRVQVRTWQGTVKQLLLFSENEGNPCLLDVCGNFLAVGTDL
AHFKTFDLSRREAKVHCSCKNLAELVPGVGGLTSLRCNASGGRISFLLSPTDSVPDSRIC
FYDVEMDTVAILDFKAAQMGQGETLSSSRQQSNRNLIFVNERLRNHVPVNHFWDQREPRL
FVCEAVQVTPGTQTQPMDMPHTEDSTGPMAEVMILAFFISEEHGFLLHDSFPLPPTCQAL
LGMEVPHYYFTRKPGEADREDKVGSATQLVVTRPLRDFMGLEDCDKPTRDAILNFSFSIT
VGDMDEAFRSIKLIKSEAVWENMARMCVKTQRLDVAKVCLGNMGHARGARALREAEQEPE
LEARVAMLAIQLGMLDDAEELYQKCRRYDLLNKFYQASGQWQKAIEVAERHDRVHLRTTC
YNYAKHLEASADRSLALSYYEKSDTHRFEVPRMLSEDLQALELYVNKMKDRTLWRWWAQY
LESQAEMDAALHYYELAQDSFSLVRIHCFQGHIQKAAEIANETGNWAASYHLARQYESQE
EVRQAVHFYTRAQAFNNAIRLCKENGLDDQLMNLALLSSPEDMIEAARYYEEKGEQMDRA
VMLYHKAGHFSKALELAFATQQFAALQLIAEDLDEKSDPALLARCSDFFMEHSQYEKAAE
LLLAAKKYHEALQLCLDQNMTITEEMAEKMTVPKDSKDLSEEARRELLEQVANCCMRQGS
YHLATKKYTQAGNKLKAMRALLKSGDTDRIVFFAGVSRQKEIYVMAANYLQSLDWRKEPE
IMKNIISFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYKCLSKARAKSPLD
QETKLAQLQSKLTLVKRFIQARRTYTEDPKEAIRQCELLLQEPDLDSTIRVGDVYGFLVE
HFLRVEDHQTAYKYLEEMRKTLRAANMSYYVDQQTVDAVHQGLGLPLVRIVPEQIHNSME
DQKEVDEVAEEVEDDP
NT seq
4371 nt
NT seq
+upstream
nt +downstream
nt
atggccctctatttcgaccaccaaattgacaccctggaagcagttgggtccgcatcgcac
atcaattggcacccagttcagccgttcttggcagtggccttcaagagctgtacttcagga
ggcagcgtggatatataccaggagcagggtcagcgtgtgcctgatgtacgtatcgagagc
tcctcccgggttaccttgctccgctggcaccccgcgcgactgctcctggctattggctgg
gagacgggagaagtgacggtcttcaaccagcaggacaaggagcagcacgtggtgcctgcg
acacacacgtccgacgtcaccgtcctcagctggagcaccagtggcagctgcctcgtgtct
ggagacaagctcggggttctgctgttgtggagattggatcagaggggtcgagtccaaggt
gcgcccttgctgaaacacgagtatggaaaacacctcactcaatgtattttccgcttgccc
cctcctggcgaggacctggtccagttggccaaggcggctgtgagtggtgacgagaaagcc
ctggacatgtttaactggaggaaaagcagctttggaagtttcccgaagatgggctcccag
gaggggctgtcactgtttgtcagtctgacagatgggactgtgcactacgtagacaagaaa
ggcaagacggcgtgtgtggcttccacagacggctccgtccagacgatgttctacgttgag
aagagggagtcgctggtcgtggtcacagagaacctgctgctgtcgctgtacacggttgcg
cctgccggggaagctgaggaagtgatgaaggtgaagttgagcgggaagacaggtcaccca
gcagacatcatcctgattgatgacagcctccttgtgacagccctaggagagccggtcctc
aggttctgggatttaggacgagaagagaattacatgctgagtctggaggaggcctgtggc
tttgaaaggggggagaacatgaactgtgtctgttactgcgccgccaaaggcctcctggca
gctggcactgacagggggcgagtggccatgtggaagaaagtgccaggccccctgagcagc
ctctgggtggaaggcaaagacaggtgggcccctcagtcgcctgctgaactggagggaaac
atcatgcaaatagagtggggctccaggaagaaccttctggcggtgaatgttgtcagctcg
gtggtgatccttcaggagcaggccctgtcatcgcatttccaccagcaagtggccgctgtg
cagatctcgccaagctcgctgtacgtgtccttcccatcggcggggacagcacacagcctg
cgcacagacatgcacatcagtggtgtgtttgccaccaaggatgctgtcgccgtctggaac
ggaaagcaggtggtgatcttcgagccttcgggggccgtgctgcggagtgcaggtgccttc
ttgtgcgagtccccagtgctagcagtgcatgaagaaagcgtttacacagtggagcccagt
cgagtccaagttcgtacctggcagggcacggtcaagcagctgctgctcttctcggagaac
gaggggaatccctgcctgctggacgtctgcggaaacttcctggctgtcggaacagacttg
gctcactttaaaacctttgatctttcccgaagagaggcaaaggtgcactgtagctgcaag
aacctggctgagctggtcccgggtgtcgggggcctcacctcgctccgctgcaacgcctcc
gggggcaggatcagcttcctcctcagcccgacggacagcgtccccgattccagaatctgc
ttctacgacgttgagatggacacagtggccattttggacttcaaggctgcacagatgggt
cagggagagacactgtcctccagcagacagcaaagtaacaggaacctcatctttgtgaac
gagagactgaggaaccatgtgcccgtgaaccatttctgggaccagcgtgagcccaggctc
ttcgtgtgcgaggccgtgcaggtgacaccaggcacccagacacagccaatggacatgccc
cacacggaggacagcaccggccctatggccgaggtcatgatcctggccttcttcatttcg
gaggaacacggcttcctgcttcacgacagcttcccgctgcctcccacctgccaggcgctt
ctggggatggaagtacctcactactacttcacgagaaagcccggagaagctgacagagaa
gacaaggtgggctcggccacccagctggtggtcacgagacccctgcgggacttcatgggg
ctggaggactgcgacaaacccactcgtgatgccatactcaacttcagcttctccatcaca
gtaggagacatggatgaagccttccggtccatcaaactcatcaagagtgaggccgtctgg
gagaacatggcgcgcatgtgcgtgaagacacagcggctagatgtggccaaagtgtgcctg
gggaacatgggccatgcccgtggggcccgcgcactccgggaagccgagcaggagccagag
ctggaggcccgagtggccatgctggccatacagctagggatgttggacgacgctgaagag
ctctaccagaagtgcaggcgctacgacctcctcaacaagttctaccaggcctccggccag
tggcaaaaggccatagaggttgctgagcgccacgaccgtgtccacctgcgcaccacctgc
tacaactatgccaagcacctggaggccagtgctgaccgcagtctggccctcagttactac
gagaagtcagacacccaccggtttgaggtgccccggatgctctccgaagacttgcaggcc
ctggagctctatgtcaataagatgaaggacaggactctgtggcggtggtgggcccagtac
ctggagagccaggcagagatggacgcggcgctgcactactacgagctggcgcaggactcc
ttctccctggtgcgcatccactgcttccagggccacatccagaaggccgcggagatcgcc
aacgagactgggaactgggctgcgtcctatcacctggcccgccagtacgagagccaggag
gaggtgcggcaggcagtgcacttctacacgagggcccaggccttcaacaacgccatccgc
ctgtgcaaggagaatggcctggatgaccagcttatgaacttggccttgctcagttccccg
gaggacatgattgaagcagcccggtactatgaggagaagggcgagcaaatggacagggca
gtcatgctgtaccacaaggcaggccacttctccaaggccctggagctggccttcgccacc
cagcagttcgcagccctgcagctcatagccgaggacctagatgagaagtcggaccctgcc
ctcctggcccgctgctcagacttcttcatggaacacagtcagtacgagaaggcagcagag
ctgctgctggcggccaaaaagtaccatgaggccctgcagttgtgtctggaccagaatatg
accatcactgaggagatggccgagaagatgactgtgcccaaggactccaaggacctgtct
gaggaggctcggcgggaactgctggagcaggtggccaactgctgcatgcgccagggcagc
taccacctggccaccaagaaatacacacaggctggcaacaagctgaaggccatgagagcg
ctgctcaagtcaggcgacacggacaggatcgtgttcttcgcgggagtctcgagacagaag
gagatctacgtcatggccgccaactacctgcagtccctggactggcgcaaggagccggag
atcatgaagaacatcatcagcttctacaccaagggaagggccctggacctcctggccggc
ttctacgacgcctgcgcccaggtggagatcgacgagtaccagaactacgacaaagcccac
ggggctctgactgaggcctacaagtgcctgtccaaggccagagccaagagccccctggac
caagagaccaagctggcccagctgcagagcaagctgaccctggtgaagaggttcatccag
gcccgcaggacatacacggaagaccccaaggaggccatcaggcaatgcgagctgctcctg
caggagccagacctggacagcaccatccgtgttggggacgtctacggcttcctggtggag
cacttcctgcgggtggaggaccatcagacggcctacaagtacttggaggagatgaggaag
acactgcgtgcagccaacatgtcctactatgtggaccagcagacggtggacgccgtgcac
cagggcctgggcctccccctggtgcgcatcgtgccggagcagatccacaacagcatggag
gatcagaaggaggtagatgaagtggcagaggaggtagaggacgacccctga
DBGET
integrated database retrieval system
