Ochotona curzoniae (black-lipped pika): 121168183
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Entry
121168183 CDS
T11174
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz04140
Autophagy - animal
ocz04148
Efferocytosis
ocz05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121168183
04148 Efferocytosis
121168183
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121168183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocz04131
]
121168183
Membrane trafficking [BR:
ocz04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
121168183
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Beta-prop_RIG_2nd
KCTD11_21_C
Beta-prop_WDR36-Utp21_1st
Lgl_C
EcoR124_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
121168183
NCBI-ProteinID:
XP_040853994
LinkDB
All DBs
Position
Unknown
AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTDTGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADRKVAVGQDDLTVVLNEEGTCTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPSLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSMWVLRDFPEDGLKIFTEDLPEVESLPRDRVLSFLIENFKGLAIPYLEHIVHVW
EETGSRFHNCLIQLYCEKVQGLMKEYLLAFPAGKTPVPAGEEEGELGEYRQKLLMFLEIS
RFYDPSRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTRMAEEYCHKHYDQNK
DGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPQANLQAALQVLELHHSKLDTTKALNLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNSADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgctttcgagcccgtgccgattctcgaaaagctgccgctgcagatcgactgt
ctggctgcctgggaggaatggcttcttgttggaaccaaacaaggacatcttcttctctat
aggattcggaaggatgttggttgcaacaggtttgaagtgacacttgagaaatccaataag
aacttctccaaaaagattcagcagatccatgtggtttcccagtttaagattctggtcagc
ttgttagaaaacaacatctatgtccatgacctgttgacatttcagcaaatcactacggtt
tccaaggcgaagggagcatcactgttcacttgtgacctccagcacacagacaccggtgag
gaggtgctacggatgtgtgtggccgtgaaaaagaagctgcagctctacttctggaaggac
agggagtttcatgaattgcagggggacttcagtgtaccagatgtgcccaagtccatggca
tggtgtgaaaattccatctgtgtgggcttcaagagagactactacttgatacgggtggac
ggaaaggggtccatcaaagagctctttccaacaggaaaacagctggagcccttagttgca
cccctggcggacagaaaagtggccgtgggtcaggatgatctcaccgtggtgctcaatgag
gaggggacctgcacacagaaatgtgccctgaactggacagacatccccgtggccatggag
caccagcctccttacatcattgcggtattgcctcgctatgtggagatccgaacgttcgag
ccgaggcttctggtacagagcattgagttgcaaaggccccgtttcatcacctcaggggga
tcaaacattatctacgtggccagcaatcattttgtttggagactcattcctgtccccatg
gccactcaaatccagcagcttctccaggacaagcagtttgaattggccctgcagcttgct
gaaatgaaagatgattctgacagtgaaaaacagcagcaaattcatcacatcaagaacctg
tatgccttcaacctcttctgccagaagcgctttgatgagtctatgcaggtgtttgctaag
cttggcacagatcccacccatgtgatgggtctgtaccctgacctgctgcccacagactac
cggaagcaattgcagtatcctaacccgttgccttcgctctctggggctgaactggaaaag
gctcacctcgctctgatcgactacctgacccagaaacgaagtcagttggttaagaagctg
aatgattctgaccaccaatccagcacctccccgctcatggaaggcacacctaccatcaag
tccaagaagaagctgctgcaaattattgacaccaccttgctcaaatgctacctgcatacc
aacgtagccctggtggcgcccttgctgcgcctggagaacaaccactgccacattgaggag
agcgagcacgtgctgaagaaagcccacaaatacagcgagctgatcatcctgtacgagaag
aaggggctgcacgagaaagctctgcaggtgctggtggaccagtccaagaaagccaactcc
cccctgaaaggccacgagaggacagtgcaatacctgcagcatctgggcacagaaaaccta
catctgattttttcctattcaatgtgggtgctgagagacttccccgaagacgggctgaag
atatttactgaagatctcccagaggtggaatccctgccccgtgatcgagtgctgagcttc
ctgatagaaaattttaagggtctggccattccatatctggagcatatcgtccatgtttgg
gaggagaccggctcgcggttccacaactgcctgatccagctctactgtgagaaggtgcaa
ggtctgatgaaggagtatctccttgccttccctgcaggcaaaactccggtccccgctgga
gaggaagagggggagcttggggaataccggcagaagctcctgatgttcctagagatttcc
aggttctacgacccaagccggctcatctgcgatttcccttttgatggcctcctggaagaa
cgcgctctcctgctgggacgcatggggaagcacgagcaagctctcttcatctacgtgcac
gttctgaaggacacaaggatggctgaggaatactgccacaagcactatgaccaaaacaaa
gatggcaacaaagacgtgtacctttccctgcttcggatgtacctgtcgccccccagcatt
cactgcctaggacccattaagttggagctgctggagccacaggccaatctccaggctgcc
ctgcaggtcctcgagctgcaccacagcaaactggacaccaccaaggctctcaaccttctg
ccagcaaacactcagatcaatgacatccgtatctttctggaaaaggtcttggaagaaaat
gcacaaaagaaacgattcaatcaagtgctcaagaaccttctccatgcagagttcttgagg
gtgcaggaggagcggatcttacaccagcaggtaaagtgcatcatcacagaggagaaggtg
tgcatggtgtgtaagaaaaagattgggaacagtgcttttgccagataccccaatggagtg
gttgtgcactacttctgttccaaagaggtgaactcagctgacacatga
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