Ochotona curzoniae (black-lipped pika): 121168322
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Entry
121168322 CDS
T11174
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz04820
Cytoskeleton in muscle cells
ocz04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121168322 (COL11A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
121168322 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocz00536
]
121168322 (COL11A1)
Glycosaminoglycan binding proteins [BR:
ocz00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121168322 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
121168322
NCBI-ProteinID:
XP_040854230
LinkDB
All DBs
Position
Unknown
AA seq
1815 aa
AA seq
DB search
MEPWSSRWKTKRWLWDFTVTTLALTFLFQARGIRAGAPVDVLKALDFHNSPEGISKTTGL
CTNRKDSRGSDTAYRVSKQAQLSAPTKQLFPGGSFPEDFSILFTVKPKKGIQSFLLSIYN
EHGIQQIGVEVGRSPVFLYEDHTGKPAPEDYPLFRTVNIADGKWHRVAISVEKKTVTMIV
DCKKKTTKPLDRSERAIVDTNGITVFGTRILDEEVFEGDIQQLLITGDPKAAYDYCEHYS
PDCDSSAPNAAQAQEPQIDEKKKSNFKKKMRTVATRSKEKPKKFTPPKSEKFASKKKKTY
RAAKAKLGVKANTVDFQEYNYGTMESYQTEAPRRVSGSNEPNPVEEVFTEEYLTGEDYDS
QRKKFEDTLYENKEIDGRDSDPLVDGDLGEYGYEYKEYEDKATPSPNEEFGPGVPAETDF
TETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGLMGPPGLQGPSGPPGDPGDR
GPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPP
GPMGLTGRPGPVGGPGSAGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMP
GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPR
GLLGPRGTPGPPGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPEGLPGPQGPIGPP
GEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVR
GLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPAGQA
GEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGIAGKPGPRGQRGPTGPRGSR
GARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQR
GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP
GPQGVSGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPI
GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEI
GEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFP
GPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGSVGSVGGV
GEKGEPGEAGNPGPPGEAGPGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV
GFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAE
GRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPP
GPVGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIP
GPAGPIGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGPPGPPGEVIQPLPILSP
KKTRRHTEGMQADAHDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQ
LSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSEGVRISSWPKETPGSW
FSEFKRGKLLSYVDVEGNSINMVQMTFLKLLTASARQNFTYHCHQSAAWYDATSGSYDKA
LRFLGSNDEEMSYDNNPYIKALSDSCASKKGYGKTVIEINTPKIDQVPIIDVMINDFGDQ
NQKFGFEVSAVCFLG
NT seq
5448 nt
NT seq
+upstream
nt +downstream
nt
atggagccgtggtcctctaggtggaagaccaagcggtggctctgggatttcaccgtgacc
accctcgcgctgacttttctcttccaagccagagggatcagagcaggtgctccagttgat
gtactaaaagcattagattttcacaattctccagaaggaatatcaaaaacaacaggatta
tgcacaaacagaaaagattctagaggatcggatactgcttatagagtttcgaaacaggca
cagctcagtgccccaacaaagcagttatttccaggtggaagttttcctgaagacttttca
atattgtttacagtaaaacccaagaaaggaattcagtctttccttttatctatatataat
gaacatggcattcaacaaattggcgttgaggttgggagatcacctgtatttttgtatgaa
gaccacactggaaaacctgccccagaagactatcctctcttcagaactgttaacattgct
gatgggaagtggcatcgggtagcaatcagtgtggagaagaaaactgtgacaatgatagtt
gattgtaagaagaaaactacaaaaccacttgatagaagtgaaagggcaattgttgatacc
aatggaatcaccgtttttggaacaaggattttggatgaagaagtttttgagggcgacatc
caacagctgttgatcactggggatcccaaagcagcatatgactactgtgagcattacagc
ccggactgtgactcttcagcacccaacgctgcccaggctcaggaacctcagatagatgag
aaaaagaaatccaatttcaaaaagaagatgaggacagtggccactagatcaaaggaaaag
cccaaaaagtttacaccccccaaatctgaaaaatttgcatcaaagaagaagaaaacttac
cgagctgcaaaagccaaactaggggtaaaggcaaatactgttgacttccaagaatacaac
tacggaacaatggaaagttatcagacagaagctcctaggcgtgtatctggatccaatgag
ccaaacccagttgaagaagtatttactgaagaatatctaactggagaggattatgattcc
cagaggaaaaaatttgaggatacactatacgaaaacaaagaaatagacggcagggactct
gatcctctagtagatggcgatttaggtgaatatggttatgagtataaagaatatgaagat
aaagcaacaccctcccctaatgaagaatttggtccaggtgtaccagcagaaactgatttc
accgagacaagtataaatggccatggtgcctatggagaaaaaggacagaaaggggaacca
gccgtggttgaaccaggtatgcttgttgaaggaccaccagggccagcaggacctgcgggt
ctgatgggtcctccaggtctccaaggccccagtggacctcctggtgaccctggtgacagg
ggccctccaggacgtcccggtttaccaggagctgatggtctgcctggtcctcctggcact
atgctaatgttaccgtttcgttatggtggcgatggctccaaaggaccgaccatctctgcg
caggaggcccaggctcaggccatccttcagcaggctcggattgctctgagaggtccacct
ggcccaatgggtctaactggaagaccaggtcctgtgggtggacctggctcagctggggcc
aaaggtgaaagtggtgatcctggacctcagggacctcgcggtgtccaaggtccccctggt
ccaactgggaaacctggaaaaaggggccgtccaggagcagatggaggaagaggaatgcca
ggggaacccggagcaaagggcgatcgtggcttcgatggacttccaggacttccaggtgat
aaaggtcataggggtgaaagaggtccacagggcccacctggtcctcctggtgatgatgga
atgagaggagaagatggagaaatagggccaaggggccttccaggtgaagctggtccaaga
ggtttactaggacccagaggaactccaggacctccggggcagcctggtattgcaggtgta
gatggccccccaggaccaaaaggaaacatgggtccccagggggagccgggacctccaggt
caacaaggaaatccaggtcctgaaggtcttcctggtccgcaaggtccaattggtccacca
ggtgaaaaaggaccccaaggaaagccaggacttgcaggacttcctggggctgatgggcct
cctggccatcctggaaaagaaggccagtctggagaaaagggagccctgggtcctcctggt
ccacaaggtcctattggctatcctggtccccgaggtgtaaagggtgcagatggtgtcaga
ggtctgaagggatctaaaggtgaaaagggcgaagatggttttccaggattcaaaggtgat
atgggtctaaagggtgatagaggagaagtaggtcaaataggcccaagaggagaagatggt
ccagaagggcccaagggtcgagcaggtccaactggtgacccaggccctgctggtcaagca
ggagagaaggggaaacttggagttccagggttaccaggatatccaggaagacaaggtcca
aagggttcaactggatttcctgggttcccaggtgccaatggagagaaaggtgcacgggga
atagctggaaaaccaggtcctcggggtcaacgtggtccaacgggtcctcgaggctcaaga
ggtgcaagaggccccactgggaaaccaggaccaaagggcacttctggtggtgatggccct
cctggccctccaggcgaaagaggccctcaaggacctcagggtccagttgggtttcctgga
ccaaaaggccctcctggaccacctgggaaggatggcctgccaggacatcctgggcagcga
ggagaaactgggtttcaaggcaagaccggacctcctggaccaggaggtgttgttggacca
cagggaccgactggagagaccggtccaataggtgaacgagggcatcctggtcccccgggg
cctcctggtgaacaaggtcttcctggtgctgctggaaaagaaggtgcaaagggtgaccca
ggtcctcaaggtgtatcagggaaagatgggccagcaggactacgtggtttcccaggtgaa
agaggtcttccaggagctcagggggcacctggactgaaaggtggagaaggtccccagggc
ccgccaggtccagttggctcaccaggagaacgaggatcagcaggtacagcgggcccaatt
ggcttgccaggacgtccaggaccccagggccctccgggtccagctggagagaaaggtgct
cctggagagaaaggtccccaaggccctgcaggaagagatggagtacaaggccctgtgggt
ctcccagggccagctggtcctgctggctcgcctggagaagatggagacaagggtgaaatt
ggagaaccaggacaaaagggcagcaaaggtgacaaaggagaaaatggtcctcctggtccg
ccaggtcttcaaggaccagtaggtgcccctggaattgctggtggtgatggtgaaccaggt
cctagaggacagcaggggatgtttggacagaaaggagatgaaggtgcaagaggtttccct
ggacctcctggtcctataggtcttcagggtcttccaggccctcctggtgaaaaaggtgaa
aatggagatgtgggtcccatgggtccacctggccctccaggcccaagaggacctcaaggc
cccagtggagcagatggcccacaaggaccaccaggatctgttggttcagttggtggtgtg
ggagaaaagggtgaacctggagaagcaggaaacccagggcctcctggagaagcagggcca
ggcgggcccaaaggagaaagaggagagaagggagaagctggtccacctggtgctgctgga
cctcctggtgctaaggggccaccaggtgatgatggccccaagggtaatccgggtcctgtt
ggttttcctggtgatcctggtcctcctggcgagcctggacctgcaggtcaagatggtgtt
ggtggtgacaagggtgaagatggagatcctgggcaaccaggccctcctggtccatctggt
gaggctggtccaccaggtcctcctggaaaaagaggtcctcccggagctgctggggcagaa
ggaagacaaggtgaaaaaggtgctaagggagaagcaggtgctgaaggtcctcctggaaaa
actggtccagttggacctcagggtcctgctggaaagcctggtccagaaggtcttcggggt
atccctggcccagtgggcgagcaaggcctcccaggagctgcaggtcaagatgggcctccg
ggacctgtgggacctcctggcttaccaggtctcaaaggtgatcccggctccaagggtgag
aagggtcatcctggtttgattggcttaattggtcctccaggggagcaaggagaaaagggt
gaccgaggactccctggaacccaagggtctccaggagcaaagggtgatggggggatccca
ggtcctgctggtcccattggtccacctggtcctcctggcctaccaggtccccaaggacca
aagggtaataaaggctccactggacctgctggccagaagggtgatagtggtcttccaggg
cctcctgggcctccgggtccacctggtgaagtcattcagcctttacccatcttgtcacct
aagaaaacaagaagacacaccgaaggcatgcaagcagatgcacacgataatattcttgat
tactcagatgggatggaggaaatatttggttctcttaattctttgaaacaagacattgaa
catatgaagtttccaatgggtacccagaccaatccagctcgaacttgcaaagacttgcag
ctcagccatcctgacttcccagacggtgaatactggattgatcctaaccaaggttgttca
ggagattccttcaaagtttactgtaatttcacatctggtggtgagacttgcatttatcct
gacaaaaaatctgaaggcgtaaggatttcatcatggccaaaggaaacaccaggaagttgg
tttagcgaatttaagagaggaaaattgctttcatatgtggatgttgaaggcaattccatt
aatatggtacaaatgacattcctgaaactgctgactgcctctgctcggcagaatttcacc
taccactgtcatcagtcagcagcctggtatgacgcaacgtcaggaagttacgacaaagca
cttcggttcctgggatcgaatgatgaggagatgtcctatgacaacaacccttacatcaaa
gcgttgtctgatagctgtgcatccaaaaaaggatatgggaagactgtgattgaaatcaac
acaccgaaaattgaccaagtacctattattgatgtaatgatcaatgactttggtgatcag
aatcagaagtttggatttgaagttagtgctgtttgctttcttggctaa
DBGET
integrated database retrieval system
