Ochotona curzoniae (black-lipped pika): 121169073
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Entry
121169073 CDS
T11174
Name
(RefSeq) nuclear RNA export factor 1-like
KO
K14284
nuclear RNA export factor
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03008
Ribosome biogenesis in eukaryotes
ocz03013
Nucleocytoplasmic transport
ocz03015
mRNA surveillance pathway
ocz05014
Amyotrophic lateral sclerosis
ocz05164
Influenza A
ocz05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121169073
03015 mRNA surveillance pathway
121169073
03008 Ribosome biogenesis in eukaryotes
121169073
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
121169073
05168 Herpes simplex virus 1 infection
121169073
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
121169073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocz03019
]
121169073
03009 Ribosome biogenesis [BR:
ocz03009
]
121169073
Messenger RNA biogenesis [BR:
ocz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121169073
mRNA cycle factors
Stress granule specific factors
121169073
Ribosome biogenesis [BR:
ocz03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
121169073
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
NTF2
Prp3_C
LRR_4
TAP_C
LRR_8
Adenylate_cycl
SnoaL_4
Motif
Other DBs
NCBI-GeneID:
121169073
NCBI-ProteinID:
XP_040855475
LinkDB
All DBs
Position
Unknown
AA seq
1072 aa
AA seq
DB search
MQNKDCAEKRESKFYDGTTHHERMKKDWALFRRRLCQENLQYEHGVSEPPPSHHQQANGA
QAVVDTQEEIELECTSYTTQYKKRMVKASHHGQIHISLCRYRKHPRKDMRGKTQDGTASC
WFKVTIPHARKYNKTKLMKSIQSYCALPFIAVDFHYIRNQACFFIQDEIAASALRDVSGK
IRDDDNRKIAVFVHRSAAPYSVQNQLKPEEMQLLKRTLYKRYDANTKRLDLQSLRLDPDL
MHHHIDMILNQRQCMAATLQIIGTEFPELSALNLCNNKLYHLDGLSDILDKAPKVRTLNL
CDNELQTVQELEKVKELKLEELWLKGNPLCRIFPDHAAYVRGILDCFPNLSRLDGKDLSP
PVAEMHGQKTTKPSEKRSQEIEMIKNLILNFLHHYYFIYDYGDRHTLINVYHEKAYFSLS
TVFNSTDPVPTELYEYAKISRNIKNITEANLRRQLLKHTNHAIVDTLNTLPKTRHYFSSF
SIDTCFYTEKSFTATVKGIFKGGMVTLHNDVNVVVVEEGSKAQKKFKCLMLKWIKWDEQT
SNIKEDNDKEFDEEAVKKTNNLCASLGGSQEIPFGIKYDEKWLLDLFQSQCGIPFTPVEF
HYDKMQAHFFVQNASVASALKSISGKICDVDNERISIFAVPSDVPRSVQEELKVGKAEQI
KLEVSKQGDASEQLADVKRPNTETGMAECNVMDHKIKMAPNARKCMAPCLRSCEGNMPKV
KSVGETDKEKGLELEEMCANRNLQGATCPDKSSSMNSILELFPKILSLHDPKPPISTVCG
TETHKMLPPCKGSFFGSEMLKNVILHFLQQYYLIYDYGDRRNLLGAYHDKACFSLTIPVN
SVSPVLKGLCEYFKNNRNMKHIKNLHLRRQLLKHTNRVIVDTLNRLPKTEHDFTSFSVDV
WVHTEMMLGFSVKGVFKGGEPQGSVCAFTRTFITIPTSNFGLCVVNDKLFVQNTSIQGTQ
SAFSTSVPIPCSSSMPILSPAQQEMVRALSIQFGMNSEWSQKLERLQMSDRAVRGAGART
EAGAAVRGEGDPVDRLLASGAGEGGERGGDARPSRDPELQRDAASGAVVTRV
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgcagaacaaggactgtgctgagaagcgagagtccaaattctatgatggtaccacccac
catgaacggatgaagaaagactgggctttgttccgtcgccgtttatgccaggaaaacctt
cagtatgaacatggtgtgtctgagcctccaccttcacaccaccaacaggcaaatggagcc
caggcagtggtagacacccaggaagaaatagagttagagtgcacttcttatactacacag
tacaagaagaggatggtaaaagcttcacatcatggccaaatccacatatctttgtgccga
tatagaaaacatccaagaaaagacatgaggggaaaaacacaggatggaactgcatcatgc
tggtttaaggtcacaattccacatgcacgaaagtataacaagacaaaactgatgaaatca
attcaaagttactgcgcgcttcctttcattgctgtggacttccattacatcaggaaccag
gcctgtttctttattcaagatgagattgcagcatccgccctgagggatgtgagtggaaag
attcgggatgatgacaaccgaaagatagctgtgttcgtccatcgctctgctgcaccctac
tctgtgcagaaccaactgaaaccagaagaaatgcaactgctgaagcgcactttgtacaaa
cggtatgatgccaacacaaagcgccttgacctacaaagtctacgccttgacccagacttg
atgcaccatcatattgacatgatactgaatcaaagacagtgcatggctgcaaccctacag
atcattggaacagaattccctgagctctcggctctgaatttgtgcaacaacaaactgtac
catctggatggcctgtctgacattttagacaaggcccccaaagtcaggaccttgaacctg
tgtgataacgagctccagacagtgcaagaactggagaaggtaaaagagctgaagctggaa
gagctgtggctgaaagggaacccactgtgcaggatcttccctgaccacgcagcctatgta
agagggattttggattgcttccccaatttgtcacgcctggatggcaaagacttatcccca
ccagttgctgaaatgcatggacagaagacaacaaaaccaagtgagaaaaggtctcaagaa
atcgaaatgataaaaaatttgatcctcaatttccttcaccactattacttcatctatgac
tatggagatcgccatactcttattaatgtttaccacgagaaggcttatttctctctgagc
actgtcttcaactccacagacccggtcccgaccgaattgtatgaatacgccaagatcagc
aggaatatcaagaacatcacagaagcaaacctgaggaggcaactgctgaagcacacaaac
catgccatcgtggacaccctcaacacgttgcctaaaactcgacattacttcagctccttc
tcaatagacacctgcttctacacagagaagtccttcactgccactgtcaaggggattttc
aagggagggatggtgacactgcacaatgatgtcaatgtggtagtagtggaagagggctcc
aaggcccagaagaaatttaagtgtcttatgctgaagtggataaagtgggatgagcagaca
tctaacataaaggaagataatgataaggaatttgatgaagaagctgtgaagaaaaccaac
aacttgtgtgctagtctgggagggtcacaagaaattccatttggaataaaatatgatgaa
aagtggctgttggatttgtttcagagccagtgtggtatcccattcacaccagttgagttt
cactatgataaaatgcaagcccacttctttgtccagaatgctagtgttgcttctgcattg
aagagtatcagtgggaagatctgtgatgtggataatgaaaggatatcaatctttgccgtt
ccttctgatgtaccccgctctgtgcaggaggagctgaaggtgggaaaagcggaacagata
aagctagaagtgagcaaacaaggtgatgcttctgagcaattggctgatgtcaaaagaccc
aacactgaaacaggcatggctgaatgcaatgtgatggaccataaaatcaaaatggcacca
aatgctagaaagtgtatggctccctgcctgagatcctgcgaagggaacatgcccaaggtg
aaatctgtgggggagacagacaaggagaaagggctggaacttgaagagatgtgtgccaac
agaaatcttcagggtgccacctgtccggataagtccagcagcatgaactctatcctagaa
ttgttccccaagattctgagcctgcacgacccaaagcctcctatatcaactgtctgtggt
actgaaacccacaagatgttaccaccctgcaagggaagcttctttggatctgagatgttg
aagaatgtgatcctgcactttcttcagcagtattacctgatctatgactatggggatcgc
cggaatctccttggtgcttaccatgataaggcctgtttttccttgaccatccccgttaac
tccgtgagcccagtcctgaaaggcctgtgtgagtacttcaagaacaacaggaatatgaaa
catatcaagaatctccacctgaggaggcaactgctgaagcacaccaaccgtgtcattgtg
gacaccctcaacaggttgcctaaaactgaacatgactttacctccttctcagtagatgtg
tgggtccacacggaaatgatgctcggcttttctgtcaaaggggtgttcaagggaggagag
cctcagggatcggtttgtgctttcactaggaccttcatcactatccctaccagtaatttt
ggcctgtgcgtcgtgaatgacaagctgtttgtgcagaacaccagcatccagggaactcag
agcgccttttccacctcagtgcccattccctgctctagctccatgcctatcctctctccg
gcacagcaagaaatggtgcgcgctttgtccattcaatttgggatgaactccgagtggtct
cagaaattggagaggctgcagatgagtgacagggcggtgcgtggcgccggggcacggacg
gaagcgggggcggcggtgcgcggggagggggatcctgttgaccgtctgctggccagcggg
gccggggaggggggcgagcgcggcggtgacgcgcggccgtcacgtgaccccgagctgcag
agggacgcagcctcgggtgcagtcgtcactcgcgtctga
DBGET
integrated database retrieval system
