Ochotona curzoniae (black-lipped pika): 121169223
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Entry
121169223 CDS
T11174
Symbol
DDX3X
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz04622
RIG-I-like receptor signaling pathway
ocz05161
Hepatitis B
ocz05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
121169223 (DDX3X)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
121169223 (DDX3X)
09172 Infectious disease: viral
05161 Hepatitis B
121169223 (DDX3X)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocz03019
]
121169223 (DDX3X)
03041 Spliceosome [BR:
ocz03041
]
121169223 (DDX3X)
03036 Chromosome and associated proteins [BR:
ocz03036
]
121169223 (DDX3X)
Enzymes [BR:
ocz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121169223 (DDX3X)
Messenger RNA biogenesis [BR:
ocz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121169223 (DDX3X)
mRNA cycle factors
Common to processing body (P body) and stress granule
121169223 (DDX3X)
Spliceosome [BR:
ocz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121169223 (DDX3X)
Chromosome and associated proteins [BR:
ocz03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
121169223 (DDX3X)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121169223
NCBI-ProteinID:
XP_040855677
LinkDB
All DBs
Position
Unknown
AA seq
661 aa
AA seq
DB search
MSHVAVENALGLDQQFAGLDLNSSDNQSGGSTASKGRYIPPHLRNREATKGFYDKDSSGW
SSSKDKDAYSSFGSRSDSRGKSSFFSDRGSGSRGRFDDRGRGDYDGIGGRGDRSGFGKFE
RGTSRWCDKSDEDDWSKPLPPSERLEQELFSGGNTGINFEKYDDIPVEATGNNCPPHIES
FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ
IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY
GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI
RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVW
VEESDKRSFLLDLLNATGKESLTLVFVETKKGADSLENFLYHEGYACTSIHGDRSQRDRE
EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA
TSFFNERNINITKDLLDLLVEAKQEVPSWLENLAYEHHYKGSSRGRSKSSRFSGGFGARD
YRQSSGASSSSFSSSRVSSSRSGGGGHGGSRGFGGGGYGGYYNSDGYGGNYNSQGVDWWG
N
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggcggtggaaaatgcgctcgggctggaccagcagtttgctggcctagac
ctgaactcctcagataatcagagcggaggaagtacagctagcaaaggacgctatattcct
cctcacttaaggaacagagaagctactaaaggcttctacgacaaagacagttcagggtgg
agttccagtaaggacaaggatgcatacagcagttttggatctcgtagcgattcaagggga
aagtcgagtttcttcagcgaccgaggcagtggatcaaggggaaggtttgatgatcgcgga
cggggtgattacgatggcatcggcggccgcggtgacagaagcggctttggcaaattcgaa
cgtgggaccagccgctggtgtgacaaatcagatgaagatgattggtcaaagccactccca
ccaagtgaacgcttggaacaggaactcttttctggaggcaacactgggattaactttgag
aaatatgatgacattccagttgaggcaacaggtaacaactgtcctccacatatcgaaagt
ttcagtgatgttgagatgggagaaatcattatgggaaacattgagcttactcgttatact
cgcccaactcccgtgcaaaagcatgctattccaattatcaaagagaaaagagacttgatg
gcttgtgcccaaacagggtccggaaaaactgcagcatttctcttgcctattttgagtcaa
atttactcggatggtccaggcgaggctttgagagccatgaaggaaaacggaaggtatggg
cgtcgtaagcaatacccaatctccttggtactggcaccaacaagagaattggcagtacag
atctatgaggaagccagaaaattttcctaccgatccagagttcgcccatgtgtggtttat
ggtggtgctgatattgggcaacagattcgagacttggaacgtggatgccacttgctagta
gccactccaggccgtttagtggatatgatggaaagaggaaaaattggattagatttctgc
aaatacctggtgttagatgaagctgatcggatgttggatatgggttttgaacctcagatc
cgcagaatagttgaacaagatactatgcctccaaaaggtgtccgccacactatgatgttt
agtgctactttccctaaggaaatacagatgcttgctcgtgatttcttggatgaatacatc
tttctggctgtgggaagagttggctctacttctgagaacatcacgcagaaagtagtgtgg
gtggaggaatcagacaaacggtcgtttctgcttgacctcctaaatgcaacagggaaggaa
tcacttaccttagtgtttgtggagaccaaaaagggtgcagattctctggagaatttctta
taccatgaaggatatgcttgcaccagtatccatggagaccgttcccagagagacagagaa
gaggcccttcaccagttccgctcaggaaaaagcccaattctagtggctacagcagtagcc
gcaagaggattggacatctcaaatgtgaaacatgtcatcaactttgacttgccgagtgat
attgaagaatacgtgcatcgcattggccgtactggacgtgtaggaaaccttggccttgcc
acctcattctttaatgagaggaacataaatattaccaaggatttgttggatcttcttgtt
gaagccaagcaagaagtgccatcttggctagaaaacttggcatatgagcatcactacaag
ggcagcagccgtgggcgttctaagagtagcagattcagtgggggatttggtgccagagac
tatcgacaaagcagtggtgcgagcagttcgagcttcagcagcagccgcgtgagcagcagc
cgcagcggcggaggcggccacgggggcagcagaggatttggcggaggtggctatggaggc
tattacaacagtgatggatatggaggaaattataactcccagggggttgactggtggggt
aactga
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