Ochotona curzoniae (black-lipped pika): 121169677
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Entry
121169677 CDS
T11174
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03030
DNA replication
ocz03420
Nucleotide excision repair
ocz03430
Mismatch repair
ocz03440
Homologous recombination
ocz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121169677 (RPA1)
03420 Nucleotide excision repair
121169677 (RPA1)
03430 Mismatch repair
121169677 (RPA1)
03440 Homologous recombination
121169677 (RPA1)
03460 Fanconi anemia pathway
121169677 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocz03000
]
121169677 (RPA1)
03032 DNA replication proteins [BR:
ocz03032
]
121169677 (RPA1)
03400 DNA repair and recombination proteins [BR:
ocz03400
]
121169677 (RPA1)
Transcription factors [BR:
ocz03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121169677 (RPA1)
DNA replication proteins [BR:
ocz03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
121169677 (RPA1)
DNA repair and recombination proteins [BR:
ocz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
121169677 (RPA1)
MMR (mismatch excision repair)
121169677 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
121169677 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
DEC-1_N
Motif
Other DBs
NCBI-GeneID:
121169677
NCBI-ProteinID:
XP_040856211
LinkDB
All DBs
Position
Unknown
AA seq
624 aa
AA seq
DB search
MVGHLSEGAIAAIMQQGDTSIKPILQVISIRPITTGNSPPRYRLLMSDGLNSLSSFMLAT
QLNPLVEKEQLCSNCVCQINRFLVNTLKDGRRVVILMELEVLKSADEVGVKIGNPVPYNE
VHGQQQTVPAPAPAPAPAPAPAANPPASKPQQQNGSSGMGPPMSKSFGASKTFGKAGGGS
LMNSSGGTQSRVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGE
IRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNDTSVMPCDDG
NHLPTVQFTFTGIDALESKSKDSLVDIIGICKSYEDATKITVKSNNREVAKRDIHLMDMS
GKVVTATLWGEDADRFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIMNPDIPEAYKLR
GWFDSEGQALDGVSISDLKSGGTMGSNTNWKTLYEVKSENLGQGDKADYFSSVATVVYLR
KENCMYQACPNQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSANIADFQENQWVTCF
QESAEAILGQNTAYLGELREKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVM
DVKPVDYREHARRLIMNIRKNAVM
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggtgggccacctgagtgagggggccatcgcggccataatgcagcagggggacacgtcc
atcaagcccatcctccaggtcattagcatccgccccattacaacggggaacagcccaccc
cgttatcgactgctcatgagtgatggattgaacagcctgtcgtctttcatgttggccaca
cagttgaaccctcttgttgagaaagaacagttgtgcagcaactgtgtttgccagattaac
cgattccttgttaacacactgaaagatggaaggagagtggttattttgatggagctagaa
gttctgaaatcagcagatgaggtcggagtgaagatcggcaacccagtgccctataatgaa
gtacacggtcagcagcagacagttccggctccagctcctgctccggctccagctccggct
ccagcagccaatcccccggccagcaagccccagcaacagaacgggagctctggaatgggt
ccccccatgtctaagtcttttggtgcctccaagacctttgggaaagccggaggtggcagt
ctgatgaactcttccggaggaacacagtccagagtggtccccatcgccagcctcacccca
taccagtccaagtggactatttgtgcccgtgtcaccaacaaaagccagatcaggacctgg
agcaattccagaggggaagggaagctgttctccctggagctggttgatgaaagtggtgaa
atcagagctactgctttcaatgagcaagtggacaaattctttcctcttattgaagtgaac
aaggtgtattatttctcgaaaggcaccctgaagatcgccaacaaacagttcacggctgtt
aagaatgactatgagatgaccttcaataatgacacgagtgtgatgccctgtgacgatggg
aaccatctccccacagtccagtttaccttcacagggatcgacgccctggagagcaagtct
aaggactcacttgtggacataattgggatctgcaagagctacgaggatgccactaaaatc
accgtgaagtccaacaacagagaagttgccaagagagatatccatctgatggacatgtcg
gggaaagtggtgactgctactctctggggagaagatgctgatagattcgatggctcgaga
cagcccgtgctagccatcaaaggagcccgggtttctgattttggtggccggagtctgtcc
gtcctgtcttcaagcactatcattatgaaccctgacatcccagaggcctataagcttcgt
ggctggttcgactcagaagggcaagccttggatggtgtttccatctctgacctcaagagt
ggaggaacaatggggagcaacaccaactggaagaccttgtacgaagtaaaatcggagaac
ctgggccaaggggacaaggctgactacttcagctcggtggccaccgtggtgtatttgcgc
aaggaaaactgtatgtaccaggcctgccctaaccaggactgcaacaagaaagtgatcgat
cagcagaacgggctataccgctgcgagaagtgcgacagcgagttccccaatttcaagtac
cgcatgatcctgtcggcaaacattgcagactttcaagagaatcagtgggtgacttgcttc
caggagtccgcagaggccatcctaggacaaaacaccgcttacctcggggaactgagagag
aagaatgagcaggcttttgaagaagttttccagaatgccaactttcgatctttcacgttc
cggatccgggtcaaactagagacctacaacgatgagtctcgaattaaggccaccgtgatg
gacgtgaagcccgtggactacagagaacatgccagaaggctgatcatgaacatcaggaag
aatgcagtgatgtga
DBGET
integrated database retrieval system
