Ochotona curzoniae (black-lipped pika): 121169814
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Entry
121169814 CDS
T11174
Symbol
CASC3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03013
Nucleocytoplasmic transport
ocz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121169814 (CASC3)
03015 mRNA surveillance pathway
121169814 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocz03019
]
121169814 (CASC3)
Messenger RNA biogenesis [BR:
ocz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121169814 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
121169814
NCBI-ProteinID:
XP_040856478
LinkDB
All DBs
Position
Unknown
AA seq
699 aa
AA seq
DB search
MADRRRQRASQDTEDEESGASGSDSGGSPARGGGGGSGSGSGSGSLPSQRGGRAGALHLR
RVESGGAQSAEESECESEDGIEGDAVLSDYESAEDSEGEEEYSEEENSKVELKSEANDAV
NSTKEEKGEDKHDTKGTVTGERQSGDGQESTEPVENKMGKKGPKHLDDDEDRKNPAYIPR
KGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALYGYDI
RSAHNPDDIKPRRIRKPRYGSPPQRDPNWIGERSNKSHRHQGPGGTLPPRTFINRNAAGT
GRMSAPRNYSRSGGFKEGRAGFRPMEAGGQHGGRSGETAKHETGYRSRRLEQTPVRDPSP
EADTPELGGPEKEEAASETPATAPEPVPPAPDRPVEKKSYSRARRTRTKVGDAGKIAEEV
PPPPEGLPPAPAVPETTPPPPAKTGNWEAPVDSTSGLEQDVAQLNIAEQSWNPGQPSFVP
PRELRGMPNHIHMGAGPPPQFNRMEEMGVQGGRAKRYSSQRQRPVPEPPAPPVHISIMEG
HYYDPLQFQGPIYTHGDSPAPLPPQGMIVQPEMHLPHPGLHPHQTPAPLPNPGLYPPPVS
MSPGQPPPQQLLAPTYFSAPGVMNFGNPSYPYAPGALPPPPPPPHLYPNTQAPSQVYGGV
TYYNPAQQQVQPKPSPPRRTPQPVTIKPPPPEVVSRGSS
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggcagcgcgcctcgcaggacacggaggatgaggagtcgggggct
tcgggctcggacagcggcggctccccggcgcgcggcggcggcggcggcagcggcagcggc
agcggcagcggctccctgccttcgcagcgcggcggccgagccggggccctgcatctgcgg
cgggtggagagcgggggcgcccagagcgccgaggagtcggagtgtgagagtgaagatggc
atcgagggcgatgctgttctctcagattatgaaagtgctgaagactcagaaggtgaagag
gaatacagtgaagaggaaaactccaaagtggagttgaagtcagaagctaatgatgctgtt
aattcaacaaaagaagagaagggggaagacaagcatgacaccaaaggcactgtgactgga
gagaggcaaagtggggatggacaggagagcacagagcctgtggagaataaaatgggtaaa
aagggtcccaagcatttggatgatgatgaagacaggaagaatccagcgtacataccccgg
aaagggctcttctttgagcatgatcttcgaggccaaactcaggaggaagaagtcagaccc
aaggggcgtcagcggaagctatggaaggatgagggccgctgggagcatgacaagtttcgg
gaagatgagcaggccccgaagtcccgccaggagctcattgctctttatggctatgatatc
cgctcagctcataaccctgatgacattaaacctcgaagaatccggaaacccagatatgga
agccctccgcaaagagatccaaactggattggtgagcggtccaataagtcccaccgccac
caaggtcctgggggcactctaccgccaaggacatttattaacaggaacgctgcaggtact
ggccgcatgtctgcacccaggaattactctcgatctgggggcttcaaagaaggtcgtgct
ggctttcggcctatggaggctggggggcagcatggaggccggtctggtgagactgctaag
catgaaactggttaccggtcccggcgcctggagcagactcccgtgagggatccgtctccc
gaagcagataccccagagcttggtggtcctgagaaggaggaggcagcctctgagacacca
gccacggctcctgaacctgtaccaccggctcctgacagacctgtcgagaagaaatcctac
tcccgggcgagaagaacccgcaccaaagtaggagatgctggcaaaattgcagaggaggtg
ccccctccacctgaagggctgcccccagctcctgcagttccagagaccacccctcctcca
cctgctaagactggaaactgggaggctcccgtggattctaccagcggactggaacaagat
gtagcacaattaaatatagcagagcagagttggaatccaggccagccttcattcgtgccg
ccccgggagcttcgaggtatgcccaaccacatacacatgggagcaggacctccacctcag
tttaaccggatggaagaaatgggtgttcagggtggtcgagccaaacggtattcatctcag
agacagagacctgttccagagccccctgctccccctgtgcacatcagcatcatggaagga
cattactatgacccactgcagttccagggaccaatctatacccatggtgacagccctgcc
ccactgcctccacaaggcatgattgtgcagccagaaatgcaccttccccacccaggttta
catccccaccagacaccagcgcctctgcccaatccgggcctctatcccccaccagtgtcc
atgtctccaggacagccaccgcctcaacagttgcttgctcccacttacttttctgcccca
ggggtcatgaactttggtaatcccagttatccttatgctccaggggcactgccccctcca
ccacctcctcctcatctgtatcctaatacgcaggccccatcacaggtgtatgggggagtg
acctactataacccagcccagcaacaggtgcagccaaagccctccccaccacggagaacc
ccccagcccgtcaccatcaagccccctccacctgaggttgtaagcaggggttccagttaa
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