Ochotona curzoniae (black-lipped pika): 121170174
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Entry
121170174 CDS
T11174
Symbol
BRIP1
Name
(RefSeq) Fanconi anemia group J protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03440
Homologous recombination
ocz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121170174 (BRIP1)
03460 Fanconi anemia pathway
121170174 (BRIP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocz03400
]
121170174 (BRIP1)
Enzymes [BR:
ocz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121170174 (BRIP1)
DNA repair and recombination proteins [BR:
ocz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
121170174 (BRIP1)
FA (Fanconi anemia) pathway
Downstream FA components
121170174 (BRIP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
ResIII
ARCH_RTEL1
F-box_4
DUF1866
Motif
Other DBs
NCBI-GeneID:
121170174
NCBI-ProteinID:
XP_040857085
LinkDB
All DBs
Position
Unknown
AA seq
1158 aa
AA seq
DB search
MSSVWSEYTIGGVKINFPCKAYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSA
LAWQQSLLNGKPVDEGLNKKAEESSSCSCVCHLNNFANNDMDQRTSHHFNSPSKLPSERN
EVLSSCQASPEKNTLAAKLSAKKQASKSRDENDDFQVEKKRIRPLETAQQMRKRHCFERE
DSHVNTNVSGDAIKLNSPRKINSFSDREEDLPSVDSLPNHCSRCCCSTKQGSSQESANTI
KKDPGGKFKRPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPEVVGNFN
RKEKCMELLDGKNGKSCYFFHGVHKISDQHTLQAFHGMCKAWEIEDLISLGKKLKACPYY
TARELVEGADIVFCPYNYLLDAQIRESMDINLKEQVVILDEAHNIEDCARESASYSVTEV
QLRFARDELDSLVSSNIRKKDHEPLRAVCYSLINWLEANTEHLVERDYESSCKIWSGNEM
LLNFHKMGITTATFPILQSHLSTVLQKEEKISQIHGKEETVEVPIISASTQIMLKGLFMV
LDYLFRQNSRFADDYKIALQQTYSWINQTDISEKNGILALPKNKKRSRQKTAVHVLNFWC
LNPAVAFSDINGQVRTIVLSSGTLSPMKSFSSELGVTFTIQLEANHVINNSQVWVGTIGS
GPNGRNLCATFQHTETFEFQDEVGALVLSVCQTVSQGILCFLPSYKLLEKLKDRWLYTGL
WENLELVKTVIVEPQGGEKTDFDELLQVYYDAIKHKGNKDGALLVAVCRGKVSEGLDFSD
DNARAVITIGIPFPNVKDLQVELKRKYNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCI
RHRNDWGALILVDDRFGSNPDRYISGLSKWVRQQIQHHSSFESALESLAQFSKKHQKGTD
VTEKHRKRAKHHDSTLEEACWKDSTPTYLLEAANYLSPENPKEDETEMSIQELPCPTTTD
SVSLPTISGKHENDPALPEEPAHSRKKERIIISRSTSPTFSKQTNRGSWSNFNSLGQFFT
DKTQSTTPELKSPKNCTSGPTFTTEEVNNKTPSPPTDKCLTVKTSLEPCPPSETIMSSIK
MDDQSKLPSYEEALDSDTESPAENEEPVHSASSRPVETEVEDDSIYFTPELYDPVDTEED
GSELVESDEDSTLANNSN
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagtgtggtctgaatataccattggtggggtgaagattaactttccttgtaaa
gcttacccctcacagcttgctatgatgaattctattgtgagaggattaaacagtaaacaa
cattgcttgttggagagcccaacaggaagtggaaaaagcttggccttactttgttctgct
ttggcatggcagcagtctcttcttaatgggaagccagtggatgagggcttaaataaaaaa
gctgaagaatcatcatcctgttcttgtgtctgccacttgaataattttgcaaacaatgac
atggaccaacgaacatcacatcattttaatagtccaagcaagctaccttctgagagaaat
gaagttttatcaagttgtcaagcctctcctgaaaaaaacactctggctgcaaagctatct
gccaagaaacaggcaagcaaatccagagatgaaaatgatgattttcaagtagagaagaaa
agaattcgaccattagaaactgcacagcagatgagaaaacgtcattgttttgaaagggaa
gacagtcacgtgaatacaaatgtttcaggagatgctataaagctcaactctccaagaaag
ataaactctttttcagacagagaggaagatcttccgtctgttgattcactccccaaccac
tgttctaggtgctgctgttctactaaacaaggaagcagtcaagaatctgcaaatacaatc
aagaaggatccaggggggaaattcaagagacccaaaatatattttggaacgcgcacacac
aagcagattgctcagattactagagagctgcggaggacagcatactcgggggtccccatg
actattctctccagcagggatcatacttgcgtccatcctgaagtagttggtaacttcaat
aggaaagaaaagtgcatggaactgttggatggaaaaaatggaaagtcgtgctatttcttt
catggtgttcacaaaatcagcgatcagcacacattgcaggcattccatggaatgtgcaaa
gcttgggaaatagaagacctcattagcctggggaagaaactaaaggcgtgtccgtattac
acagctcgagagctagtggaaggtgctgatatagtgttttgtccctacaactatcttcta
gatgcgcaaataagggaaagtatggatataaatctgaaggaacaggttgtcatcttagat
gaagctcataacattgaggattgtgctcgggaatcggcaagctacagcgtgacagaagtc
cagcttcggtttgctagagatgaattagatagtttggtcagcagtaatataaggaagaag
gaccatgaacctctacgagctgtgtgctacagcctcattaattggttagaagcaaacact
gaacatcttgtggaaagagattatgaatcttcctgtaaaatatggagtggaaatgaaatg
ctcttaaattttcacaagatgggcatcaccactgctactttccccattttacagagtcat
ctttctacggttcttcaaaaagaggaaaaaatctcacaaattcatgggaaggaagagaca
gtagaagtacctattattagtgcttcaactcaaattatgctcaaaggactgtttatggtg
cttgactacctttttcgtcaaaatagcagatttgcagatgactataaaattgctcttcaa
cagacttattcctggataaatcagactgatatttcagaaaaaaatggcatcttggctcta
ccaaaaaataagaaacgttcacgacagaaaactgcggtccatgtgctcaacttctggtgc
ttaaatccagctgtggccttttcagatattaatggccaagttagaacaattgttttgtca
tctggcacattatcaccaatgaaatctttctcatcagagcttggcgttaccttcactatc
caactggaggccaatcatgtcattaataattcacaggtttgggttggcactattggctca
ggccccaatggccggaatctctgtgctaccttccagcatactgagacgtttgagttccag
gatgaagtgggagctcttgtgttatctgtgtgccagactgtgagccaaggaattttatgt
tttctgccatcttacaagcttttagagaaattaaaagatcgttggctgtacactggttta
tgggagaatctggagttggtgaagacagtgattgtagaaccacaaggaggagagaaaact
gattttgatgaattactgcaggtgtattatgatgcaatcaagcacaaaggcaacaaagat
ggagccctcttggtagcagtgtgtcgtggtaaagtgagtgagggtctggatttctcagat
gacaacgcccgtgctgtcataacaataggaattccttttccaaatgtgaaagacctacag
gttgaactgaagcgcaagtacaatgaccaccattcaaaattaagaggtctcttacctgga
cggcagtggtatgaaattcaagcatacagggccttaaaccaggcccttggtaggtgtatc
cgacacaggaatgactggggagctcttattctagtggatgaccgctttggaagtaaccca
gaccgctacatatctggactttctaagtgggtaagacaacagattcaacaccattcatcc
tttgaaagtgcactggagtccctggctcaattttccaaaaaacaccaaaaaggaactgat
gtgactgaaaagcacagaaagcgtgcgaagcaccatgactccactcttgaagaagcctgt
tggaaggacagtaccccaacgtacctgctggaagcggcaaattatctatcaccagaaaac
cctaaggaagacgaaacagaaatgtctatccaggaactaccatgccccacaacaactgac
agtgtctctctaccaactatctctggaaagcacgagaatgatccagcattaccagaagag
cctgcccactcaaggaaaaaggaaaggattatcatttccagatctacaagcccaactttc
agcaaacaaaccaacagaggcagctggtctaactttaattccttgggacagtttttcact
gataaaacacagagcacaactcctgagctcaagtcaccaaagaactgtacttccgggcct
actttcacaacagaggaagtgaataataaaactccttcgccacccactgataaatgtctg
acagtgaagacatcacttgaaccatgtcctccatcagaaaccatcatgtcatcaataaag
atggacgatcagtccaaactgcccagctatgaagaagccctggactcagacactgagtcg
cctgcagaaaatgaagaacctgtccactcagcttcaagcagacctgttgagacagaagtg
gaagatgactccatctattttacacctgaactgtatgatcctgtagacacagaggaagac
ggcagtgaacttgttgaaagtgatgaagatagcacattggctaataattcaaattag
DBGET
integrated database retrieval system
