Ochotona curzoniae (black-lipped pika): 121170513
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Entry
121170513 CDS
T11174
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121170513
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocz03041
]
121170513
Enzymes [BR:
ocz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121170513
Spliceosome [BR:
ocz03041
]
Complex C
Other components
Step II factors
121170513
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
AAA_16
Sigma54_activ_2
PhoH
TsaE
ABC_tran
nSTAND_NTPase5
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
121170513
NCBI-ProteinID:
XP_040857745
LinkDB
All DBs
Position
Unknown
AA seq
1220 aa
AA seq
DB search
MAVAVAPAGMFAGSEPGPAEELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKN
TTFDTFKASLVKNGAEFTDSLISNLLRLIQTMRPPAKPSTSKDPVVKPKTEKEKLKELFP
GLCQPDNPSVRTMLDEDDVKVAVDVLKELEALMPSAAGQEKQRDTEHRDRTKKKKRSRSR
DRDRDRDRDRDRERDRDHKRRHRSRSRSHSRTRERNKGKSRYRSRSRSQSPSKDRKDRDK
YGDRNLDRWRDKHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISEL
RREGRVANVADVVSKGQRVKVKVLSFTGTKTSLSMKDVNQETGEDLNPNRRRNLVGETNE
ESSMRNPDRPTHLSLVSAPEVEDDSLERKRLTRISDPEKWEIKQMIAANVLSKEEFPDFD
EETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPIKIVKNPDGSLSQAAMMQS
ALAKERRELKQAQREAEMDSIPMGLNKHWVDPLPDAEGRQIAANMRGIGMMPNDIPEWKK
HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQ
YLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKY
MTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATL
DAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEPPGDILVFL
TGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATN
IAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCY
RLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQ
LYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYR
PKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRK
QMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSA
LFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEP
LYNRYEEPNAWRISRAFRRR
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggccgtggccccggcgggaatgttcgccgggtcggagccgggccccgcggaa
gaactcgccaaactcgagtacctgtcgttggtttcgaaggtgtgcaccgagctggacaat
cacttggggatcaacgacaaggatctggctgaatttgtgatcagtcttgctgagaaaaat
actacctttgataccttcaaagcttctttagtcaaaaatggtgcagaattcacggattct
cttattagtaacttgctgcggctcatacagaccatgcggcctccggcaaagccttctacc
agcaaagatccggttgttaaacccaaaacggaaaaagaaaagctgaaggaactcttccct
ggcctttgccagccggacaacccttctgttcggaccatgctggatgaagatgatgtgaaa
gttgctgtggatgtcctgaaagaactcgaagctttgatgcccagtgcagcgggacaggag
aagcagagagacactgagcatcgggacaggacgaaaaagaagaagaggagtcggagccgg
gatcgagaccgggaccgggacagagaccgggacagagagcgagacagagaccataagcgg
agacaccggtctcgttctcgatcacattccaggactcgggaaaggaataaagggaagtcc
agatatcgatccagaagcagaagtcaaagtccttccaaagaccggaaggatcgggacaaa
tatggggatcggaatctggacagatggcgggataagcatgtggaccgccccccgcctgag
gagcccgccatcggggacatttacaatggcaaagttaccagcatcatgcagtttggctgc
tttgtgcagctggagggactaaggaagcggtgggaaggcctggtgcacatctctgagctt
cggcgggaaggccgtgtggccaatgtagctgatgtggtgagcaaaggccagagggtcaaa
gtcaaggtgctgtccttcactgggaccaagaccagcctgagcatgaaggatgtaaatcag
gaaactggagaagatctaaatccgaatcgacggcgcaatcttgttggggaaaccaacgag
gagagttcaatgcggaacccagacaggcccactcacctctccctcgtcagcgcccctgaa
gttgaggatgactccctggagcgcaagcgcctcacccgcatctctgacccggaaaagtgg
gagatcaaacagatgattgctgccaacgtgctttccaaagaagagttccccgactttgat
gaagagactggcattctccctaaggtggatgatgaagaagatgaggaccttgagatcgaa
ctggttgaggaagaaccgccattcctgagagggcacacgaagcagagtatggacatgagc
cccattaaaatcgtcaagaacccagatggctccctctcccaagcagcgatgatgcaaagt
gccttggccaaagaaagacgggaactcaagcaggcccaacgcgaagctgagatggattct
atcccaatgggactcaacaaacactgggttgatcctctgcctgatgcggaaggcagacaa
attgctgccaacatgaggggcattgggatgatgcccaacgacattcctgagtggaagaaa
catgcctttgggggcaacaaagcttcttacggaaaaaagacccagatgtcaatccttgag
caaagggaaagcctgcctatctataagctgaaggagcagctagtccaggctgtgcatgac
aatcagattctgattgtcattggcgagacaggatctgggaagacaacacagatcacccag
tacctggcggaggcaggatacacttccaggggcaagattgggtgtacccagccccgcaga
gtggcagccatgtcggtggccaaaagggtgtcagaggaatttggttgttgcttaggtcaa
gaggtgggctacaccattcgatttgaagactgcaccagccctgaaacagttatcaagtat
atgacggacgggatgttgcttagggagtgcctgattgaccccgaccttacccagtacgcg
atcatcatgttggacgaggcgcacgagaggacaattcacaccgacgtgctctttgggttg
ttgaaaaagacggttcagaagcggcaggacatgaagctgattgtcacctcagccaccttg
gatgcggtgaaattttctcagtacttctatgaagcgcccatcttcaccatcccaggccga
acatacccagtggagatcttgtacacgaaggagccggagacagattatctggatgccagc
ctgatcaccgtcatgcagatccacctgacagagccgccaggtgatatcttggtcttcctg
acgggtcaggaagagatcgacactgcttgtgagatcctgtatgaaaggatgaagtcgctg
ggacctgatgttccggagttaattatcctgcccgtgtactctgctcttcccagtgagatg
cagacccggatctttgacccagctccgcccggcagcagaaaggttgtgattgccaccaac
attgcggaaacctccctgaccatcgatggcatctactatgtggtggaccctggatttgtg
aagcaaaaggtttataattctaagacagggatcgaccagctggtggtaacacccatttcc
caggctcaagcaaagcagcgagctggcagagctgggaggacaggtccagggaagtgttac
aggctgtatacggaacgtgcctaccgagatgaaatgctgaccaccaatgtgccggaaatc
cagagaaccaacttagcaagcacagtgctgtcactcaaggccatgggcattaatgacctg
ctctcgttcgacttcatggacgcccccccaatggagaccttgatcacagcgatggagcag
ctgtacaccctgggggccctggacgacgagggcctgctcactcgcctgggccgtaggatg
gcagagttccccctggagccaatgttgtgcaaaatgctcatcatgtcggtgcatctgggc
tgcagtgaggaaatgctcaccatcgtgtccatgctgtctgtgcagaatgtcttctaccga
cccaaggataaacaagctctcgcagatcagaagaaagccaaattccaccagactgaaggg
gatcacctcaccctgctggccgtgtacaactcctggaagaacaacaaattctctaacccg
tggtgctatgagaacttcatccaggcgcgttccctgcgccgggctcaggacattcgcaaa
cagatgttgggcataatggacagacacaagctggacgtggtctcctgtggcaagtccaca
gtccgagtgcagaaagccatctgcagcggcttcttccgcaatgctgccaagaaggacccc
caggagggttaccggaccctgatcgaccagcaagtggtttacatccatccttccagcgct
ctcttcaacagacaaccggaatgggtggtataccatgaactggtgctgaccacgaaggag
tacatgcgtgaggtcacgaccatcgacccccggtggcttgtggagtttgccccagccttc
ttcaaggtctctgacccaactaagctcagcaagcagaagaagcagcagcgtcttgaaccc
ttgtacaaccgctatgaggagcccaatgcctggagaatatcccgggccttccgacggcgc
tga
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integrated database retrieval system
