Ochotona curzoniae (black-lipped pika): 121170514
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Entry
121170514 CDS
T11174
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121170514 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocz03041
]
121170514 (PRPF8)
Spliceosome [BR:
ocz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121170514 (PRPF8)
Complex C
U5 SnRNP specific factors
121170514 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
121170514
NCBI-ProteinID:
XP_040857749
LinkDB
All DBs
Position
Unknown
AA seq
2335 aa
AA seq
DB search
MAGVFPYRGPGNPVPGPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
AAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
SQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagtgtttccttaccgaggcccggggaacccggtgcccggccctctggccccg
cttccggactacatgtcggaagagaagctgcaggagaaagcccgaaaatggcagcagctg
caggccaagcgctatgccgaaaagcgcaagtttggatttgtggatgcccagaaggaagat
atgcccccagaacacgtcaggaagatcattcgagatcatggtgacatgaccaacaggaag
ttccgccacgacaagagggtctacctgggtgccctcaagtacatgcctcatgcagtcctc
aagctcctggagaacatgccgatgccttgggagcagatccgggatgtgcctgtgctctac
cacatcactggagccatttccttcgtcaacgaaatcccctgggtcattgagcctgtctac
atctcccagtgggggtccatgtggattatgatgcgtcgagaaaagagggacaggaggcat
ttcaagaggatgcgttttcctccattcgatgacgaggagccgccactggactacgctgac
aacatcctagatgttgagcccctggaagccatccagctggagctggatcccgaggaggat
gcccctgtgttggactggttctatgaccaccagcctctgagggatagcaggaagtatgtg
aatggctccacctaccagcgctggcagttcacactgcccatgatgtccactctgtaccgc
ctggccaatcagctcttaacagacttggtggatgacaactacttctatctgtttgatttg
aaggccttctttacctccaaggcactcaacatggccattcctggaggccccaaatttgaa
cctcttgttcgagacatcaacctacaggatgaagactggaatgagttcaacgatattaac
aaaatcatcatccggcagcctattcgcactgaatacaagattgcttttccctatttgtac
aataaccttccacaccacgtgcacctcacctggtaccacactcctaatgtcgtgttcatc
aaaacggaggatcccgatttgccagctttctacttcgatcctttgatcaacccaatctcc
cataggcactcggtcaagagccaggaaccactgccggacgatgatgaagaatttgaactg
ccagagtttgtggagcccttcctgaaggacacacccctctacacagacaacacagccaat
ggcattgccttgctctgggccccgcggcccttcaacctgcgctctggtcgcacccgccga
gctctcgatataccccttgtcaagaactggtatcgagaacactgtcctgctggacagcct
gtgaaagtgcgggtctcctaccagaagctgctcaagtactatgtcctaaacgccctgaag
catcggccaccaaaggcccaaaagaagaggtatttgttccgttccttcaaagccaccaaa
ttctttcagtccacaaagctggattgggtggaggtggggctgcaggtgtgccgccagggc
tataacatgctcaaccttctcatccaccggaaaaacctcaactacctgcacctggactac
aacttcaatctcaaacctgtcaagacactcaccaccaaggaaagaaagaaatctcgcttt
gggaatgctttccatttgtgtcgagaagtcctgcgtctaactaagctggttgtggacagt
cacgtgcagtatcgtttgggcaatgtggacgccttccagctggcagatggactgcagtac
atatttgcacacgtggggcagctgactggcatgtatcgctacaaatacaagctgatgcgg
cagattcgcatgtgcaaggacttgaagcatctcatctactaccgcttcaacacgggccct
gtagggaagggccccggatgtggcttctgggctgccggctggcgggtctggctgtttttc
atgagaggcattactcctctgttggagcggtggctgggcaacctcctggcccggcagttt
gaaggtcgacactcaaagggagtggcaaagacagtgacaaagcagcgagtggagtcccat
tttgacctggagcttcgggcagccgtgatgcatgacattctggacatgatgcccgagggg
atcaaacagaacaaggcgcggacgatcctgcagcacctcagtgaagcctggcgctgctgg
aaggccaacattccctggaaggtcccagggctgccaacccccatagagaacatgatcctt
cgatatgtgaaggccaaggccgactggtggaccaatactgcccactataatcgagagcgg
atccgccgtggggccacggtggacaagactgtttgcaaaaagaacctggggcgcctcacc
cgactgtacctaaaggcagaacaagagcggcagcacaactacctgaaggacgggccttac
atcactgcagaggaagcagtggcagtatataccaccactgtgcattggttggaaagccgc
aggttctcacccatcccattccccccactttcctacaagcatgacacaaagttgctcatc
ttggccttggaacgtctcaaggaagcctacagtgtgaagtctcgattaaatcagtctcag
agggaggagctgggtctgatcgagcaagcttatgacaacccccacgaagcactgtctcgc
ataaagcgtcacctgctcacccagagagcctttaaggaggtgggcattgagttcatggat
ctctatagccacctagtgcccgtgtatgacgtggagccactggagaagatcaccgacgcc
tacttggaccagtacctgtggtatgaagctgacaaacgccgcctcttcccaccctggatc
aaacctgccgatacagaacctcctccactgctcgtttacaagtggtgccaaggcatcaat
aacctgcaggatgtttgggagaccagtgaaggcgagtgcaatgtcatgctggagtcacgc
tttgagaagatgtatgaaaagatagacttgacactgctcaacaggctcctgcgcctcatt
gtggaccacaacatagctgactacatgacagccaagaacaatgttgtcatcaactataag
gatatgaaccacacaaattcctacgggatcatcagaggcctgcagtttgcctctttcatc
gtgcagtactatggcttggtcatggatttgctggtgttgggtttgcaccgagctagtgag
atggctgggccccctcagatgccaaacgacttcctcagtttccaggacatagctactgag
gccgcccaccccatccgcctcttctgcagatacatcgatcgcatccacattttcttcagg
ttcacagcagacgaggctcgggacctgatccagcgttacctgacggagcaccctgacccc
aacaacgaaaacatcgttggctataataacaagaagtgttggcctcgagatgcccgtatg
cgcctgatgaagcacgatgtcaatttgggtcgggctgtgttctgggacatcaagaaccgc
ctgccacggtcggtgactacggtgcagtgggagaacagctttgtgtccgtgtacagtaag
gacaaccccaacctgctgttcaacatgtgtggctttgagtgtcgcatcctgcctaaatgt
cgcacaagctatgaggagtttacccacaaggacggagtgtggaacctacagaatgaggtt
actaaggagcggacggctcagtgcttcttacgtgtggatgatgagtccatgcagcgcttc
cacaaccgtgtgcgtcagattctgatggcctccggctccaccaccttcactaagattgtg
aataagtggaatacagctcttattggcttgatgacatactttcgggaggctgtggtgaat
actcaggaactcctggacttgctggtcaagtgtgagaacaagatccagacacgaatcaag
attggactcaattctaagatgccaagtcggttccctccggtcgtgttctatacccctaag
gagctggggggactcggcatgctctcgatgggccacgtgctcatccctcagtccgacctc
aggtggtccaagcaaacagatgtaggtattacacactttcgttctggaatgagccatgaa
gaagaccagttgattcccaacttgtaccgctacatacagccttgggagagtgagttcatt
gattctcagcgggtgtgggctgagtatgcacttaagagacaagaggccattgctcagaac
agacggctgactttggaagatctggaagactcatgggatcgtggcatccctcgcatcaac
accctcttccagaaggaccggcacacattggcttatgataagggctggcgtgtccgaact
gactttaagcagtaccaggttttgaaacagaaccccttctggtggacacaccagcggcat
gacgggaagctctggaacctgaacaactaccgtacagatatgatccaggcactgggtggc
gtggaaggcattctggaacacactctcttcaagggcacttacttccctacctgggagggt
ctcttctgggagaaggccagtggctttgaagaatctatgaagtggaagaagctcactaat
gctcagcgatcaggcttgaaccagattcccaaccgtagattcaccctctggtggtctccg
accatcaaccgagctaatgtgtatgtaggctttcaggtgcagctggacctgacgggcatc
ttcatgcatggcaagattcccacgctgaagatctcgctcatccagatcttccgagctcac
ttgtggcagaagatccatgaaagcattgtcatggacttgtgtcaggtatttgaccaggaa
ctggatgcactagaaattgagactgtacagaaggagacaatccaccctcgaaagtcctat
aagatgaactcttcctgtgcagatatactgctctttgcctcctataaatggaatgtctcc
cggccatcactgctagcagactccaaggatgtgatggacagcaccaccactcagaagtac
tggattgatatccagttgcgatggggagactacgattcccatgacatagaacgctacgca
cgggccaagtttctggactacaccacagacaacatgagtatttacccttcacccactggt
gtactcattgccattgacctggcctataacctgcacagtgcctatggaaactggttccca
ggcagcaagcccctcatacagcaggccatggccaagatcatgaaggccaacccagccttg
tatgtgctacgtgaacggatccgcaagggtttgcagctctattcatcagagcccactgag
ccttatctgtcctctcagaattacggtgagctcttctccaaccagattatctggtttgtg
gatgacactaacgtctaccgagtgacaattcacaagacttttgaagggaacttgacaacc
aaacccatcaatggggccatcttcatcttcaatccacgcacagggcagctgttcctgaag
atcatccacacatctgtgtgggctggacagaagcgattggggcagttggctaagtggaag
actgccgaggaagtggccgccctgatccggtccctgcctgtggaagagcagcccaagcag
atcattgtcaccaggaagggcatgctggacccgctggaggtgcacctgctggacttcccc
aacattgtcatcaaaggatccgagctccagctccccttccaggcctgtctcaaggtggag
aagtttggggatctcatccttaaagccaccgagcctcagatggtcctcttcaacctctac
gatgactggctcaagaccatctcgtcatacacggctttctcccgtctcatcctgattctg
cgtgctctccacgtgaacaacgatcgggcaaaggtgatcctaaagccagacaagactaca
attacggagccccaccacatctggcccaccctgaccgatgaggagtggatcaaggtggag
gtgcagctcaaggatcttatcctggctgactacggcaagaaaaacaacgtgaacgtggca
tcgctgacacagtcagaaatccgagacatcatcctgggcatggagatctcggctccctcc
cagcagcggcagcagatagcagagatagagaagcagaccaaggagcagtcgcagctgact
gccacccagactcgcaccgtcaacaagcatggcgacgagatcatcacctccaccaccagt
aactatgagacccagaccttctcgtcaaagaccgagtggagggtcagggccatctctgct
gccaacctacacctgaggaccaatcacatctatgtttcatctgatgacatcaaggagacg
gggtacacctacatcctccccaagaacgtgctgaagaagttcatctgcatctccgacctt
cgggcccaaattgcaggatacctgtatggggtgagcccgccagacaacccccaggtgaag
gagatccgctgcatcgtgatggtaccacagtggggtacccaccagaccgtacacctgccc
agccagctgccccagcacgagtacctcaaggagatggagcccttaggatggatccacact
cagcccaatgagtccccgcagctgtcaccccaggatgtcaccacccatgctaagatcatg
gctgacaacccatcctgggatggtgagaagaccattatcatcacctgcagcttcacacca
ggctcatgcacgctgacagcctataagctcacccccagtggctacgagtggggccgccag
aacacagacaagggcaacaaccccaagggttacctcccctcgcactacgagagggtccag
atgctgctgtcagatcgcttcctcggcttcttcatggtccctgctcagtcctcgtggaac
tacaacttcatgggtgttcggcacgaccccaacatgaagtatgagttgcagctggcaaac
cccaaggagttctaccacgaggtgcacagaccctctcacttcctcaactttgccctcctg
caggagggtgaggtgtactccgccgaccgcgaggacctctacgcctga
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integrated database retrieval system
